| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6250 |
|---|
| Symbol | |
|---|
| ID | 6182805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 837146 |
|---|
| End bp | 838201 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641689377 |
|---|
| Product | ABC transporter substrate binding protein |
|---|
| Protein accession | YP_001816236 |
|---|
| Protein GI | 172065524 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.126747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTTC CGTTTTCGCC GGCTCTGCGC CGCACGACCC GGCTCGCGCG CCGCGCGCTG
GCCGCCACGC TCACCGGCGC GCTGGCATTC GCCGCCGCCG GCACGCCGCA AGCCGCGCAC
GCGGAAGGCC GCATCCGCAT CGCCGAGCAG TTCGGCGTCG TCTACCTGAT GCTGAACGTC
GCGCGCGACC AGCAGCTGAT CGAGAAGGAA GGACGCAAGG CCGGCGTCGA CATCAAGGTC
GACTGGGTGC GGCTGTCGGG CGGGGCGGCC GTGAACGACG CGCTGCTGTC GGGCGCGGTC
GATATCGCCG GCGCGGGCGT CGGGCCGCTG CTGACCGTGT GGGACCGCAC GCGCGGCCGG
CAGAACGTGA AGGGCGTCGC GTCGCTCGGC AATTTTCCGT ATTACTTGGT CAGCAGCAAC
CCGAACGTGA AGACGATCGC CGACCTGGGC GCGAAGGACC GCATCGCGTT GCCGGCCGTC
GGCGTGTCGG TGCAGTCGCG CGTGCTGCAG TACGCGGCCG CGAAGCAGTG GGGCGACAAG
CAGTTCGACA AGCTCGATCC GCTGACCCAG GCGATCCCGC ATCCCGATGC GACGGCCGCG
ATCCTCGCGA ACAGCACCGT GATCACCGGC CACTTCGGCA ATCCGCCGTT CCAGGAGCAG
GAACTCGCGG GCAATCCGAA CGCGCACATC GTGCTGAATT CCTACGACGT GCTCGGCGGC
CCGAGTTCCG CGACGGTGCT GTATGCGACC GGGAAATTCC GCGACGACAA CCCGAAGACG
TACCGCGCGT TCGTCGCCGC GCTCGCCGAC GCGGCCCGCC AGATCGCGGC CGATCCCGAG
CGCGCGGCCG ACACCTATAT CCGCGTGAAC GGGTCGAAGA TCGATCGCGC ATTGCTGCTG
AAGATCCTGC GCAATCCGCA GGTGCAGTTC AAGACGGCCC CGCAGAACAC GCTGAAGCTC
GCGCAGTTCA TGTATCGCAC CGGCGCGATC CGCAACGAGC CGAAGTCGTG GCGCGACTAC
TTCTTCGACG ATCCGGCGAC GGCCGGCGGC AGTTGA
|
|---|
| Protein sequence | MSFPFSPALR RTTRLARRAL AATLTGALAF AAAGTPQAAH AEGRIRIAEQ FGVVYLMLNV
ARDQQLIEKE GRKAGVDIKV DWVRLSGGAA VNDALLSGAV DIAGAGVGPL LTVWDRTRGR
QNVKGVASLG NFPYYLVSSN PNVKTIADLG AKDRIALPAV GVSVQSRVLQ YAAAKQWGDK
QFDKLDPLTQ AIPHPDATAA ILANSTVITG HFGNPPFQEQ ELAGNPNAHI VLNSYDVLGG
PSSATVLYAT GKFRDDNPKT YRAFVAALAD AARQIAADPE RAADTYIRVN GSKIDRALLL
KILRNPQVQF KTAPQNTLKL AQFMYRTGAI RNEPKSWRDY FFDDPATAGG S
|
|---|
| |