Gene BamMC406_6141 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6141 
Symbol 
ID6182298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand+ 
Start bp725608 
End bp726225 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content57% 
IMG OID641689269 
Productaspartate racemase 
Protein accessionYP_001816128 
Protein GI172065416 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1794] Aspartate racemase 
TIGRFAM ID[TIGR00035] aspartate racemase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.422237 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTGGCG AAGGTCTGCA CTGCGCGAAA CTGGTCCTTG CACAGACCGA CTTCGAGGTG 
ATCGAACGTC GACAACGGGA AGGGCGCTGG GATATCGTGG GCGACTTGCT TGCTGCAGAG 
GGTAACAAGC TGAAGGCTGC GGGCGCCGAT TTCTTCCTTC TGGCCTGTAA TACCGTACAT 
ACGGCAGCTG AGCGGATCGA GGCGAATGTC GATCTGCCGT TCATCCACAT AGTCGATCCA 
ACGGCCCGCA GCGTACTGGA GAGAGGCTAC AAAACCGTCG GTTTGCTTGG CAGCCGCTAC 
ACGATGACAG GAACCTATTT CGTTGGCCGG CTCAAGGATC GCTATGGCCT CGACGTTGTC 
ATTGCAGAGG GCGAGCACCA GGAGAACGTA CACAACGCCT TGTACGAAGA ACTGGCCAAG 
GGCATCTTCC TGCCCGAAAC ACGCGAGAAG TTCAGGAGAG CGATCGCCGA TCTGGTATCC 
CGTGGCGCGG AAGTGATTGT TCTGGGATGT ACGGAGTTCG GCATGCTTGT CAAACCCGAG 
GATAGCCCCG TCCCGATTAT CGATACGTCC ATTGCTCATG CCGAGGCTGC AGTCAGATTG 
GCATTGGCGT CCGAATAG
 
Protein sequence
MGGEGLHCAK LVLAQTDFEV IERRQREGRW DIVGDLLAAE GNKLKAAGAD FFLLACNTVH 
TAAERIEANV DLPFIHIVDP TARSVLERGY KTVGLLGSRY TMTGTYFVGR LKDRYGLDVV 
IAEGEHQENV HNALYEELAK GIFLPETREK FRRAIADLVS RGAEVIVLGC TEFGMLVKPE 
DSPVPIIDTS IAHAEAAVRL ALASE