Gene BamMC406_6048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6048 
Symbol 
ID6182067 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp610689 
End bp612209 
Gene Length1521 bp 
Protein Length506 aa 
Translation table11 
GC content69% 
IMG OID641689178 
Productdiguanylate cyclase 
Protein accessionYP_001816037 
Protein GI172065325 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.423069 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGCAT CCTCTTCGAT CGAGAAAATT GCCGACTGGG CCGGCCGCCA CCACCTGATC 
GTCGGTGTGC TCGGCACGCT GATGTCGGTC GCGGCGCTCG GCATCAGCGC GGTGACGCTG
TGGGCCGCGC GCAGCGAAGT CGTCGAACAT GCGCACGAGA CGTCGCGCAA TGTCGCGGCT
GTCCTCGTCA GCGAGATCGC GCGCACCGTC GAAACGTCCA ACAACGCGCT CGTGTCGCTC
GCCGCCGATC TCGGCAACCC CGCGATCGTG CGCCTGAAGG CCGGTTTGCG TCACGACGTG
CTGTTCGAGC GCACGGCCGC GCAATACGTG ACCGGCATGG GCGTGACGGA CCGCTACGGG
CGGCTGATCG ACGGTTGTTG CGGCCCGACG CACAACTGGG ACTTCAGCGA TCGCGACTAC
TTCAAGGTTC ATCGCGATTC GGACAACGTC GGCCTCTACG TGTCCGAGGC GTACCGCGCG
CGTTCGCGCG GCGGCACCGA ATCGATCGCG CTGTCGCGGC GCATCGAACG GCCGGATCAT
GCATTCGACG GGATCGCGGT GGTCGCCGTC GATCTCGCCT ACTTCGATCA GCTGCTGTCG
CGGTTGAACG TCGGCCCGCA CGGCGTCAGC GCGATCCTGC GCGCGGACGG CACGATCCTC
GCGCGCAATC CGCCGTTGAC CGATCACCAG ATGGTGCGCG TGCGCCGGTC GAAGTCGTTC
GAGCGGATGG TGAGCCGCGA AGCGGGCTTC TATGCGGCGC GCTCGAGCAT CGACGGGACG
TTGCGGCTGT ATACGTACCA GCGGGTACCC GGCACGCCGC TGATCGCCGT GGTCGCGCCG
GCCGAGAGCG ACGTGCTGGC CGGCATCACG CGCCTGACGT GGACGGCGGG CGTGTCGGCG
TGCGTCATTG GCGCGCTGTT CTGCGCGGTG GTGTGGCTGC TCGCCTTCGC GCTGCGCGAC
AACCTGCGCA AGCAGACGCT GCTCACGGAC CTCACGCGCA CCGATCCGCT GACGGGCCTG
CACAACCGTC GCGCACTCGA TGCCGCGCTC GCCGACGAAT GGGAACGGCT GCAGCGCGGC
AGCGACGGCA GCCTGTCGGT GCTGTTCATC GATGCCGATC ACTTCAAGCA GTACAACGAC
CGCTACGGCC ATGCGCAAGG CGACACCGCG CTGCGCTTTC TCGCCGAATG CATCCGCGCG
CATACGCGAC GGCGCGGCGA CCTTGCCGCA CGTTACGGCG GCGAGGAATT CGTCGCGGTG
TTGCCCGACA CGGACGAGCG CGGTGCGCAG CAGGTCGCCG AAGCGATTCG CGGCGCCGTG
GAGCGCAACC GGCTCGACGG GTTCGACGCG ACGATGCCGG CCTTCACGGT CAGCATCGGC
TGCGCGACCG GCCATCGCGC GCGGCCGCCG TCCGTGCATG CGCTCACGCA TCAGGCCGAC
CTCGCCCTCT ATGCGGCCAA GCGTCAGGGC AGAAACCGCG TGTGCGTCGC CGACGTGGAA
TCGCTCGCGC AACCGGCGTG A
 
Protein sequence
MPASSSIEKI ADWAGRHHLI VGVLGTLMSV AALGISAVTL WAARSEVVEH AHETSRNVAA 
VLVSEIARTV ETSNNALVSL AADLGNPAIV RLKAGLRHDV LFERTAAQYV TGMGVTDRYG
RLIDGCCGPT HNWDFSDRDY FKVHRDSDNV GLYVSEAYRA RSRGGTESIA LSRRIERPDH
AFDGIAVVAV DLAYFDQLLS RLNVGPHGVS AILRADGTIL ARNPPLTDHQ MVRVRRSKSF
ERMVSREAGF YAARSSIDGT LRLYTYQRVP GTPLIAVVAP AESDVLAGIT RLTWTAGVSA
CVIGALFCAV VWLLAFALRD NLRKQTLLTD LTRTDPLTGL HNRRALDAAL ADEWERLQRG
SDGSLSVLFI DADHFKQYND RYGHAQGDTA LRFLAECIRA HTRRRGDLAA RYGGEEFVAV
LPDTDERGAQ QVAEAIRGAV ERNRLDGFDA TMPAFTVSIG CATGHRARPP SVHALTHQAD
LALYAAKRQG RNRVCVADVE SLAQPA