Gene BamMC406_6032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6032 
Symbol 
ID6181849 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp591402 
End bp592724 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content67% 
IMG OID641689162 
Productxylose isomerase 
Protein accessionYP_001816021 
Protein GI172065309 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2115] Xylose isomerase 
TIGRFAM ID[TIGR02630] xylose isomerase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.383264 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.793977 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTATT TCGAACACAT TCCCGCGATT CGTTACGAAG GTCCGCAGTC GGACAACCCG 
CTGGCCTACC ACCATTACGA CGCCGAGAAG CGCGTGCTCG GCAAGACGCT GGCCGAGCAT
CTGCGGATCG CCGTGTGCTA CTGGCACACG TTCGTATGGC CGGGGCACGA CATCTTCGGG
CAGGGCGCAT TCCAGCGGCC CTGGCAGCAG CCCGGCGACG CACTCGAGCG GGCGCGGCTG
AAGGCCGATG CGGCATTCGA ATTCTTCACG AAGCTCGGTA CGCCGTTCTA TACGTTCCAT
GACACGGACG TCGCGCCGGA GGGCGACAGC CTGCGCGAGT ACGCGGCCAA TTTCGCGCGG
ATGGTCGACT ATCTCGGCGA GCGCCAGCAG GCGAGCGGCG TGCGGCTGCT GTGGGGGACC
GCGAACCTGT TCTCGCACCC GCGCTTCGCG GCGGGCGCCG CGACGAACCC GAACCCCGAC
GTGTTCGCGT GGGCCGCGGC CCAGGTGTGC CACGCGCTCG ACGCGACGCA CCGGCTCGGT
GGCGAGAACT ACGTGCTGTG GGGCGGCCGC GAAGGGTACG AGACGCTGCT CAATACCGAC
CTGAAGCGCG AGCGCGACCA GTTCGCGCGC TTCCTGTCGA TGGTCGTCGA GCACAAGCAC
CGGATCGGCT TCAAGGGCGC GTTGCTGATC GAGCCGAAGC CGCAGGAGCC GACCAAGCAC
CAGTACGACT ACGACGTCGC GACCGTGCAC GGCTTCCTCG TGCAGTACGG ACTGCAGAAC
GAGATCCGCG TGAACATCGA GGCCAACCAC GCGACGCTAG CCGGTCATTC GTTCCATCAC
GAGATCGCAA ATGCGTTCGC GCTCGGCGTG TTCGGTAGCG TCGACGCGAA CCGCGGCGAT
CCGCAGAACG GCTGGGACAC TGACCAGTTT CCGAACAGCG TCGAGGAGCT GACGCTCGCG
TTCTACGAGA TCCTGCGCCA CGGCGGCTTT ACCACCGGCG GGATGAACTT CGACGCGAAG
GTGCGCCGCC AGAGCGTCGA TCCGGAAGAC CTGTTCTACG GCCACGTCGG CGCGATCGAC
GTGCTCGCGC TCGCACTCGA ACGAGCGGCG GTGCTGGTCG AGAACGACCG GCTCGACGCG
CTGCGCCGGC AGCGCTACGC GCAGTGGGAC GATGCGTTCG GCCAGAAGAT CCTGTCGGGC
GGCTATACGC TGCAGTCGCT CGCCGAGGAC GCGCTCGCGC GCGGCGTGGA CCCGCGGCAT
GCGAGCGGCG CGCAGGAGCG GCTCGAGAAC ATCGTGAACC AGGCGATCTA CGGGCTGCGC
TGA
 
Protein sequence
MSYFEHIPAI RYEGPQSDNP LAYHHYDAEK RVLGKTLAEH LRIAVCYWHT FVWPGHDIFG 
QGAFQRPWQQ PGDALERARL KADAAFEFFT KLGTPFYTFH DTDVAPEGDS LREYAANFAR
MVDYLGERQQ ASGVRLLWGT ANLFSHPRFA AGAATNPNPD VFAWAAAQVC HALDATHRLG
GENYVLWGGR EGYETLLNTD LKRERDQFAR FLSMVVEHKH RIGFKGALLI EPKPQEPTKH
QYDYDVATVH GFLVQYGLQN EIRVNIEANH ATLAGHSFHH EIANAFALGV FGSVDANRGD
PQNGWDTDQF PNSVEELTLA FYEILRHGGF TTGGMNFDAK VRRQSVDPED LFYGHVGAID
VLALALERAA VLVENDRLDA LRRQRYAQWD DAFGQKILSG GYTLQSLAED ALARGVDPRH
ASGAQERLEN IVNQAIYGLR