Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6032 |
Symbol | |
ID | 6181849 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | + |
Start bp | 591402 |
End bp | 592724 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641689162 |
Product | xylose isomerase |
Protein accession | YP_001816021 |
Protein GI | 172065309 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2115] Xylose isomerase |
TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.383264 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.793977 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTATT TCGAACACAT TCCCGCGATT CGTTACGAAG GTCCGCAGTC GGACAACCCG CTGGCCTACC ACCATTACGA CGCCGAGAAG CGCGTGCTCG GCAAGACGCT GGCCGAGCAT CTGCGGATCG CCGTGTGCTA CTGGCACACG TTCGTATGGC CGGGGCACGA CATCTTCGGG CAGGGCGCAT TCCAGCGGCC CTGGCAGCAG CCCGGCGACG CACTCGAGCG GGCGCGGCTG AAGGCCGATG CGGCATTCGA ATTCTTCACG AAGCTCGGTA CGCCGTTCTA TACGTTCCAT GACACGGACG TCGCGCCGGA GGGCGACAGC CTGCGCGAGT ACGCGGCCAA TTTCGCGCGG ATGGTCGACT ATCTCGGCGA GCGCCAGCAG GCGAGCGGCG TGCGGCTGCT GTGGGGGACC GCGAACCTGT TCTCGCACCC GCGCTTCGCG GCGGGCGCCG CGACGAACCC GAACCCCGAC GTGTTCGCGT GGGCCGCGGC CCAGGTGTGC CACGCGCTCG ACGCGACGCA CCGGCTCGGT GGCGAGAACT ACGTGCTGTG GGGCGGCCGC GAAGGGTACG AGACGCTGCT CAATACCGAC CTGAAGCGCG AGCGCGACCA GTTCGCGCGC TTCCTGTCGA TGGTCGTCGA GCACAAGCAC CGGATCGGCT TCAAGGGCGC GTTGCTGATC GAGCCGAAGC CGCAGGAGCC GACCAAGCAC CAGTACGACT ACGACGTCGC GACCGTGCAC GGCTTCCTCG TGCAGTACGG ACTGCAGAAC GAGATCCGCG TGAACATCGA GGCCAACCAC GCGACGCTAG CCGGTCATTC GTTCCATCAC GAGATCGCAA ATGCGTTCGC GCTCGGCGTG TTCGGTAGCG TCGACGCGAA CCGCGGCGAT CCGCAGAACG GCTGGGACAC TGACCAGTTT CCGAACAGCG TCGAGGAGCT GACGCTCGCG TTCTACGAGA TCCTGCGCCA CGGCGGCTTT ACCACCGGCG GGATGAACTT CGACGCGAAG GTGCGCCGCC AGAGCGTCGA TCCGGAAGAC CTGTTCTACG GCCACGTCGG CGCGATCGAC GTGCTCGCGC TCGCACTCGA ACGAGCGGCG GTGCTGGTCG AGAACGACCG GCTCGACGCG CTGCGCCGGC AGCGCTACGC GCAGTGGGAC GATGCGTTCG GCCAGAAGAT CCTGTCGGGC GGCTATACGC TGCAGTCGCT CGCCGAGGAC GCGCTCGCGC GCGGCGTGGA CCCGCGGCAT GCGAGCGGCG CGCAGGAGCG GCTCGAGAAC ATCGTGAACC AGGCGATCTA CGGGCTGCGC TGA
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Protein sequence | MSYFEHIPAI RYEGPQSDNP LAYHHYDAEK RVLGKTLAEH LRIAVCYWHT FVWPGHDIFG QGAFQRPWQQ PGDALERARL KADAAFEFFT KLGTPFYTFH DTDVAPEGDS LREYAANFAR MVDYLGERQQ ASGVRLLWGT ANLFSHPRFA AGAATNPNPD VFAWAAAQVC HALDATHRLG GENYVLWGGR EGYETLLNTD LKRERDQFAR FLSMVVEHKH RIGFKGALLI EPKPQEPTKH QYDYDVATVH GFLVQYGLQN EIRVNIEANH ATLAGHSFHH EIANAFALGV FGSVDANRGD PQNGWDTDQF PNSVEELTLA FYEILRHGGF TTGGMNFDAK VRRQSVDPED LFYGHVGAID VLALALERAA VLVENDRLDA LRRQRYAQWD DAFGQKILSG GYTLQSLAED ALARGVDPRH ASGAQERLEN IVNQAIYGLR
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