Gene BamMC406_6029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6029 
Symbol 
ID6181846 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp587487 
End bp588659 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content68% 
IMG OID641689159 
Productarabinogalactan endo-1,4-beta-galactosidase 
Protein accessionYP_001816018 
Protein GI172065306 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3867] Arabinogalactan endo-1,4-beta-galactosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0780998 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAGAA GATCGATGTT GCGCTGGAGT ATCTCGACTG CGGCGCTCGC CTGCGTCGAC 
CTGGCCGGCA CGCTGCCGGC CGCCGCGCAA GGGGTCGCGC AAGGCGTTGC GCGCGGCGCG
GGTGGCGCCC CGTTGGCGAT GGGCGCGGAC GTGTCGACGC TGCCGGAGCT CGAAGCGCAT
GGCGCGCAAT ACTTCGACCG CGGGCATCCG CGCGACTGCC TGAAGATCCT GCACGCGCAT
GGCGTCGATT CGATCCGCAT CAAGGTCTGG AACGATCCCG GCAACCCGGA CTTCTTCCCC
GCGAACCAGA GCGATGCGGC CGGCTACAAC AATGCCGCAC ACGTCGTGGC GCTCGCGAAA
CGTGCGGCCG CGCTGGGGAT GCGCATCCTG ATCGACTTCC ACTACAGCGA CTGGTGGGCC
GACCCCGGCA AGCAATACCC GCCGCATGCG TGGGCCGGCA AGAATCTCGC CGATACATGC
GCGCTGCTGT CGGCCTATAC GACCGACGTG CTGCGCCAGC TTCAGCGCGC CGGCGTGCGG
CCCGAGTGGG TGCAGATCGG CAACGAGATC ACCGGCGGCA TGCTGTGGCC GCTCGGCCGC
TACGACCAGT GGGACAACCT CGCGCAGCTG CTGAAGACGG GCCGCGATGC GGTGAAGGCC
GTCGATCCGC GCATCAAGGT GATGCTGCAT ATCGACAGCG GCGGCGACAA CGCGAAAAGC
CGCTGGTGGT TCGACAGCGC GACGCAGCGC GGCGTGACGT TCGACGTGAT CGGCCTGTCG
TATTACCCGC AGTGGCAAGG CTCGCTCGAC GACCTGCGCA ACAACGCGAA CGACCTCGCG
GTGCGCTACG ACAAGGAGCT GATCGTCGTG GAAACCGCGT ATCCGTGGAC CACCAGCGAC
GGCGACTCGG AACCGAACGC GATGACGAAC ACCGGCTCGA CCGCGTTCCC GCCGTCACCG
GCCGGCCAGG CGCAATTCCT CGCGGCGGTC GTCGATATCG TGAAGGGCGT GCCGGGCAAT
CGCGGCAAGG GCGTGTTCTG GTGGGAGCCG GAATGGATCC CGACGCCGGG CGTCGGCTGG
AAGGTCGGCG CGGGTGATCA GTGGGACAAC AACACGTGGT TCGACTTCCA CGGCAACGCG
CTGTCGTCGC TCGACGCGTT CCGCCGGCGC TGA
 
Protein sequence
MNRRSMLRWS ISTAALACVD LAGTLPAAAQ GVAQGVARGA GGAPLAMGAD VSTLPELEAH 
GAQYFDRGHP RDCLKILHAH GVDSIRIKVW NDPGNPDFFP ANQSDAAGYN NAAHVVALAK
RAAALGMRIL IDFHYSDWWA DPGKQYPPHA WAGKNLADTC ALLSAYTTDV LRQLQRAGVR
PEWVQIGNEI TGGMLWPLGR YDQWDNLAQL LKTGRDAVKA VDPRIKVMLH IDSGGDNAKS
RWWFDSATQR GVTFDVIGLS YYPQWQGSLD DLRNNANDLA VRYDKELIVV ETAYPWTTSD
GDSEPNAMTN TGSTAFPPSP AGQAQFLAAV VDIVKGVPGN RGKGVFWWEP EWIPTPGVGW
KVGAGDQWDN NTWFDFHGNA LSSLDAFRRR