Gene BamMC406_6026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6026 
Symbol 
ID6181843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp583267 
End bp584118 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content67% 
IMG OID641689156 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001816015 
Protein GI172065303 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.548734 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.778236 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATCCGA TGCCCATGTC CCGCTGGGGA CGTCCCGCCC GATGGCTGTA CCGGCTGTCG 
CTGCCGTGCG CGCTCGCGCT GTGGCTCGTG CCGCTGCTCG CGGTGCTCGT CACGTCGATC
CGCTCGACCG ACGAGATCAT GGCCGGTCAC TACTGGGACT GGCCGAAGCA GTTCGCGCTG
GTCGAGAACT ACGGCACCGC GCTCACGCAG ACGCCGATGC TGCATTACTT CGCGAACAGC
ATCCTGATCA CGGTGCCGTC GGTCGCCGCG TCGATCCTGC TCGCGTCGCT CGCCGGGCAC
GCGCTCGCGA ACTACCGGTT CCGCGGCAAT CTCGTGCTGC TCGGGCTGTT CGTCGCGGGC
AACTTCGTGC CGATCCAGAT CCTGATGATC CCGGTGCGGC AGATCATGCT CGGCGTCGGC
CTGTACAACA CCGTATGGGC GCTGGTGCTG TTCCATACCG CGTTCCAGAC CGGCTTCTGC
ACGCTGTTCC TGCGCAACTT CATCCGCGAG CTGCCGTTCG AGCTGATCGA GGCCGCGCGC
GTCGAAGGCG CGTCGGAGTG GGCGATCTAC TGGCGCGTCG TGCTGCCGCT CGTACGGCCG
GCGCTCGCGG CGCTCGCGAT CCTCGTGTTC ACGTTCGTGT GGAACGACTA CTTCTGGGCG
CTGTGCCTCA CGCAAGGCGA CGACGCGGCG CCGATCACCG TCGGCGTCGC CGCGCTCAAG
GGGCAGTGGA CGACCGCCTG GAACATCGTG TCGGCCGGCT CGGTGCTCGC CGCGCTGCCG
TCGGTGCTGA TGTTCTTCGC GATGCAGAAG CACTTCGTCG CGGGGCTCAC GTTCGGCGCG
ACGAAAGGCT GA
 
Protein sequence
MYPMPMSRWG RPARWLYRLS LPCALALWLV PLLAVLVTSI RSTDEIMAGH YWDWPKQFAL 
VENYGTALTQ TPMLHYFANS ILITVPSVAA SILLASLAGH ALANYRFRGN LVLLGLFVAG
NFVPIQILMI PVRQIMLGVG LYNTVWALVL FHTAFQTGFC TLFLRNFIRE LPFELIEAAR
VEGASEWAIY WRVVLPLVRP ALAALAILVF TFVWNDYFWA LCLTQGDDAA PITVGVAALK
GQWTTAWNIV SAGSVLAALP SVLMFFAMQK HFVAGLTFGA TKG