Gene BamMC406_6001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6001 
Symbol 
ID6181886 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp554551 
End bp555759 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content69% 
IMG OID641689131 
Productresponse regulator receiver protein 
Protein accessionYP_001815990 
Protein GI172065278 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4963] Flp pilus assembly protein, ATPase CpaE 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.188719 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAATA TCCTCGTAGC CGCCGACGAT ACCGCCCGGC TCATGCAGAT CGCGCGTCTG 
GTCACCGACA GCGGACACTA TCGCGTGACA CGTGCGCACG GTCGGCCGTC CCAGATCGAG
CATCGCACCG ATGGACTCGA TTCATTCGAT ATCCTTCTGA TCGACGGCGC ATTGGCCGAT
GCGGCCGAGC TGTCGGCGAT CGAGCGGATC TGCCGGCTGC ACCCGTGCCT GATCGGCATC
CTGGTGACCG CGGATGCGGC GCCGCATGTG CTGCTGGACG CGATGCGCGC CGGCGCGCGC
GACGTGCTGC AGTGGCCGAT CGATCCGGCC GCCCTCGCCC GCGCGCTCGA ACGCGCCGCC
GCGCAAAGCA CGCGGCGCGA CGGCGGAGAC ACGCGCTTCG TGTCGTTCAT GTCGTGCAAG
GGCGGCGCGG GCACCAGCTT CGCCGCGAGC AACGTCGCGT ACGAGATCGC CGAAGCCCAC
AAGCGCCGCG TGCTGCTGGT CGATCTGAAC CAGCAGTTCG CGGATGCCGC GTTCCTCGTC
AGCGACGAAA CGCCGCCGTC GACGCTGCCG CAGCTCTGCG CGCAGATCGA GCGGCTCGAC
GGCGCGTTTC TCGACGCGAG CGTCGCGCAC GTGACGCCGA CCTTCCACGT GCTGGCGGGC
GCGGGCGACC CGGTCAAGGC CGCCGAGATG CGCGAGGATG CGCTCGAATG GATCCTCGGC
GTCGCGGCGC CGCGCTACGA CTTCGTGATC TTCGACATCG GCGTGAGCAT CAATCCGCTG
TCGATGATCG CGCTGGATCG CAGCGACCAG ATCCATCTCG TGCTGCAGCC CGCGATGCCG
CACGTGCGCG CGGGCCGCCG GCTGCTGGAG ATTCTCGTGT CGCTCGGCTA CCCGGTCGAC
CAATTGCGGC TGGTGGTGAA CCGGATGACG CGCGCGGGCG AACGGTCCCG CGCCGCACTC
GAGGAAGTGC TCGGCCTGCA TGCCAGCTGC ACGATACCCG ACGATGCCGA CACGGTGCGC
GAAGCGCTCG ACCTGGGGCA TCCGGCCTCG CGCGTCGCAC GTGGCGCCGC GGTGACGCGG
GCATTGCAGG CCTGCGCGAA GCAGATCGTC GAAGGGGACG TGCGCACGCG GCACGGCACG
TCCAGCAGCG AACCGTTGAT GTCCCGGCTG TTCGGCCGCA AGGCCACGCC GAAGCTCAAG
TCCATGTGA
 
Protein sequence
MINILVAADD TARLMQIARL VTDSGHYRVT RAHGRPSQIE HRTDGLDSFD ILLIDGALAD 
AAELSAIERI CRLHPCLIGI LVTADAAPHV LLDAMRAGAR DVLQWPIDPA ALARALERAA
AQSTRRDGGD TRFVSFMSCK GGAGTSFAAS NVAYEIAEAH KRRVLLVDLN QQFADAAFLV
SDETPPSTLP QLCAQIERLD GAFLDASVAH VTPTFHVLAG AGDPVKAAEM REDALEWILG
VAAPRYDFVI FDIGVSINPL SMIALDRSDQ IHLVLQPAMP HVRAGRRLLE ILVSLGYPVD
QLRLVVNRMT RAGERSRAAL EEVLGLHASC TIPDDADTVR EALDLGHPAS RVARGAAVTR
ALQACAKQIV EGDVRTRHGT SSSEPLMSRL FGRKATPKLK SM