| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5996 |
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| Symbol | |
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| ID | 6181948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 549959 |
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| End bp | 551929 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641689126 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001815985 |
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| Protein GI | 172065273 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.344192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATCA ATCCGCAATA TTCAGGTACC GGCCCGGTGC GCACGCGCAT CGCCCGGGGC
GCGATGATGG CCGCGATCCT CTGTGCAGGA ACGTTGACCG TGTACAGCGC ACTGGCCCAG
GAAGGCGTCG AATCGGCTGC GCTGATGAAG GGCGGTGCCA GCGCGCCGGC CGCCGTCGCG
AAGGGGCCGA TGCAGATGAC GATCAGCATG GCGCCGGCGC CGGCCACCGC GGCCGCCGCA
TCGGCGGCGC CGATGCGCGG ACCGAACTGC GTGGGCGCCG TGCGTGATGC GACCAGCGTC
AGCGTGCCGC TCGGCAAGTC GCTGCTCGTG CCGATGCCGG AGCCGGTGCG CAACCGCACC
ATCGGCAATC CGGCCGTCGC GCAGGCGACG ATGGTGTCGC CGCAGACGCT GTACATCCTC
GGGCTGTCGG TCGGCACGAC CAACATGATC GTGCAGGGCA GGAGCGGCGC ATGCCGCGTG
ATCGACGTGG CGGTCGGCGC GGACGCCGGC GGCCTGCAGT CGTCGCTGCA GCAGCTGATG
CCGGGCGAGC GCGACATTCA CGTGTCGACC GCCGCCGGCA CGATCGTGCT GGCCGGCACC
GTGTCGAACT CGCAGGCCGC GCAGCAGGCG GTGCAGATCG CCCATGCGTA CAGCGACAGC
GCCGGTGACG GCGGCGGCGC CGGCAAGGGC GCCGGCGTGC TGAACATGCT GGCCGTCACG
TCGCCGCAGC AGGTGATGCT CGAGGTGAAG GTCGCCGAAG TGTCGAAGAC GCTGATCAAC
CAGATGGGCA GCGCATTCAA CATCCAGGGC GGCTTCGGTT CGTGGAGCGG TGCGTTGGTC
AGCAACCTGC TCGCGGGCGT TGCCAGCGCC GGGATCTTCA ACAAGGCGAA CAACAAGCCG
TTCAGCGTCG CGGCCGATGC GCAGAACACC GACAACCTCG TCAAGATTCT CGCGGAGCCC
AACCTCGTGA CGATCAGCGG CCAGGAGGCA ACGTTCCTTG CCGGCGGCAA GATCTTCATC
CCGATTCCGC AGAGCAGCGG CAACGGCACG TCGTCGATCA CGCTGCAGGA GGAGGAGTTC
GGCGTCGCGC TGAAGTTCAC GCCGACGGTG CTCGCGAACG GCCGGATCAG CCTGAAGGTG
GCGCCGGAAG TGTCGGAGCT GTCGCAGACG GGCGTCACGC TGAGCGCGAC GAACATCGGC
GGCACGTCGA TCCTGCCGCT GATCACGACC CGGCGTGCGT CGACGACGGT CCAGATGAGC
GACGGCGAAT CGTTCGCGAT CGGCGGGCTG ATCAAGGACA ACGCGACTGG CGCGCTCAAG
GCGATCCCGG GCGTCGGCGA GGTGCCCGTG CTCGGCGCGC TGTTCCGCAG CACGTCGTTC
CAGCAAGACC GCACCGAGCT GATCTTCCTG ATCACGCCGC ACCTGGTGAG GCCGCTGCAG
ACCGCCGACG TGCCGTTGCC GACCGACAGC TTCTCGAAGC CGAACGAAGT CGACGTGTAC
GCAACCGGCA ACATGGAAGG CCGCAAGGGT GTCCGCAAGG CGACCATGCA ACCGTCGAAC
GGCGCGGCAC CGCAGACGCC GGCTTCGGCA CCGGCTCCGG CGCCGCAATC GGCTGCGCCG
GTCGCACCTG CCGCCGCACT GCCCGCACCG CGTGCGCCGC AGCCTGCCCA GGCACCGGCG
CCGGTGCCGG CCCAGCCGGA GAAGGCCGGG GCTGCAACGG CCGAGGCCGC GGGGGCGGTG
AACGCCGAGC CGGCGCCCGC CGCGCGGCCG CAGCCGCAAG CGCCCGCGCA ACCGCAGGCC
GATGCGGCCG GTGCGGCGCG GATCGCGCGG ATCGAAGCCA CCGCCGCGCG CCTCGCGGCG
GCCGGCTCCG CCACGTCGGC GAAACCTGCG CCGCGTCCGA CGCCCAGCGT GCCGGCCGCC
CATGCGCAGA TCGCGCGGGC GAGCGCGGCA CCCCAGTCCA CCGATCGTTG A
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| Protein sequence | MKINPQYSGT GPVRTRIARG AMMAAILCAG TLTVYSALAQ EGVESAALMK GGASAPAAVA
KGPMQMTISM APAPATAAAA SAAPMRGPNC VGAVRDATSV SVPLGKSLLV PMPEPVRNRT
IGNPAVAQAT MVSPQTLYIL GLSVGTTNMI VQGRSGACRV IDVAVGADAG GLQSSLQQLM
PGERDIHVST AAGTIVLAGT VSNSQAAQQA VQIAHAYSDS AGDGGGAGKG AGVLNMLAVT
SPQQVMLEVK VAEVSKTLIN QMGSAFNIQG GFGSWSGALV SNLLAGVASA GIFNKANNKP
FSVAADAQNT DNLVKILAEP NLVTISGQEA TFLAGGKIFI PIPQSSGNGT SSITLQEEEF
GVALKFTPTV LANGRISLKV APEVSELSQT GVTLSATNIG GTSILPLITT RRASTTVQMS
DGESFAIGGL IKDNATGALK AIPGVGEVPV LGALFRSTSF QQDRTELIFL ITPHLVRPLQ
TADVPLPTDS FSKPNEVDVY ATGNMEGRKG VRKATMQPSN GAAPQTPASA PAPAPQSAAP
VAPAAALPAP RAPQPAQAPA PVPAQPEKAG AATAEAAGAV NAEPAPAARP QPQAPAQPQA
DAAGAARIAR IEATAARLAA AGSATSAKPA PRPTPSVPAA HAQIARASAA PQSTDR
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