Gene BamMC406_5995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5995 
Symbol 
ID6181947 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp549000 
End bp549845 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content68% 
IMG OID641689125 
ProductFlp pilus assembly protein CpaB 
Protein accessionYP_001815984 
Protein GI172065272 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3745] Flp pilus assembly protein CpaB 
TIGRFAM ID[TIGR03177] Flp pilus assembly protein CpaB 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0325272 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAACA GTCGAGCGGT CATGATGCTG ATCATCGCGA TGGTCGCGGG GCTTGCCGCG 
GTCGTGTTCG CGTCTCGCTG GTTGATGAAT ACCTCCAGCA GCTCGGTCAC GTCGGTCGCG
GTGGCGACCA CCGACCTGAA CCTGGGCGAG CCGCTCGGGC CGAACCAGAT CCACATGGTG
AGCTGGCCGT CCGGCAGCGT GCCGACCGGC GCGTTCGCCG ACACGAAGGA GCTCGAAGGG
CGCGTCGTAC GCACGAGCCT CGCCCGCGGC GAGCCGGTGA TCGAGTCGAA GCTCGCGCCG
GTCGGCACGA AGGGCGGATT GTCAGCGGTG ATCGCCGACG GCAGCCGCGC GATCACCGTG
CGCGTGAACG ACGTGGTCGG CGTCGCGGGC TTCGCGCTGC CGGGCAACTA CGTCGACGTG
ATCGTCAACA CGCAGGAACA GCAGGGCAAG ACCGACGGGC AGAGCATCTC GAAGATCGTG
CTCGAGCACA TCCTCGTGCT CGCCGTCGCG CAGCAGGTCA GCCGCGACGA CACCGCACCG
AAGGTCGTCA ACGCGGTGAC GCTCGAAGTC ACGCCCGATC AGGCCGAACG CCTCGATCTC
GCGCGCAGCG TCGGCACGCT GTCGCTCGTG CTGCGCAACC AGGTCGACCA GAAGACGCTG
ACCACCGACG GCGCAACCAA GCTGACGTTG CTCGGCAAGG CGCCGGTACC CGACGCGACG
CCCGCACCGG CACCCGCGCA CGTACGGACC GTGCGCGTGC ATGTCGCGTC GCACGCCGCA
CCAGAAGCGC GTCGCGATTG CGTTGGTGTG CTGACCGGTG TGCACGGCAG CGTCGAATGC
TTCTGA
 
Protein sequence
MKNSRAVMML IIAMVAGLAA VVFASRWLMN TSSSSVTSVA VATTDLNLGE PLGPNQIHMV 
SWPSGSVPTG AFADTKELEG RVVRTSLARG EPVIESKLAP VGTKGGLSAV IADGSRAITV
RVNDVVGVAG FALPGNYVDV IVNTQEQQGK TDGQSISKIV LEHILVLAVA QQVSRDDTAP
KVVNAVTLEV TPDQAERLDL ARSVGTLSLV LRNQVDQKTL TTDGATKLTL LGKAPVPDAT
PAPAPAHVRT VRVHVASHAA PEARRDCVGV LTGVHGSVEC F