Gene BamMC406_5986 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5986 
Symbol 
ID6181938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp539803 
End bp541242 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content65% 
IMG OID641689116 
Productmajor facilitator transporter 
Protein accessionYP_001815975 
Protein GI172065263 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCCCA CCGTCACCGC GGATTCGCGT CCGCACGATT CGCCCTTCAT CGATGTCGAC 
GTCATGCCGG GCGCCGCGAT CGCCGCGCGC ATGGATCGGC TGCCGATCAC CCGCCATCTG
TGGATGCTGG TGCTGCTGAT TTCACTGGGC GGCTTTTTCG AAGTCTACGA TCTGATCTTC
ACCGGCTATA TCGCGCCGGG CATGGCGAAG AGCGGCGTGC TGCAAACCAC CACGCACGCG
TTTTTCGGCT TCACCGGAAT CGCCGGCTTC ATCGCCGCGA CGTTCGCCGG CCTGTTCGTC
GGCACGTTCG GGCTCGGCTG GATGCCCGAT CGCTACGGCC GGCGCGCGGT GTTCACGGTG
TCGCTGCTCT GGTATTCGAT CGGCTCGGTG ATCATGGCAT TTCAGACGAC CGCCGAAGGC
ATGATCCTCT GGCGCTTCAT CACGGGAATC GGCGTCGGGG TCGAGATCAT CACGATCGAC
AGCTACGTGA CGGAACTCGT CCCGCAGCAG ATGCGTGGCC GCGCGATGGC GTTCAACCAG
AGCGTGATGT TCGCGGCGGC GCCGGTCGCC GCGATCTTGT CGTACTGGCT GGTGCCGACC
ACGATGCTCG GCATCGACGG ATGGCGGGTC GTGGTGCTCG CGGGCGCGCT CGGCGCGTTG
CTGGTGTGGT TCATCCGGCG CGGCGTGCCG GAGAGTCCGC GGTGGCTCGC GATGCACGGA
CAGGTCGCGA GGAGCGACGC GATCGTGCGG CACATCGAGG CGATCGTCGA ACGTCAGTCG
GGGCAGCCGC TGCCGCCACC GTCACCGATC GTCGAACAGC CCCGGCATCG ACGCGCGTCG
CTCGCGGAGT TGTGGCAGCC GCCGTATCGT TCGCGCCTCG TGATGCTGAT CGTCTTCAAC
TTCTGCCAGG CGATCGGCTA TTACGGTTTC GCGAACTGGG TGCCGACACT GTTGATCAGC
CAGGGCATCA CGGTCACGAA AAGCCTGCTC TATTCGTTCA TCATCGCGTT CGCGTTGCCG
GTCGGGCCGC TGCTGGCGAT GGCCGTCGCC GACCGGATCC AGCGCAAATA CCTGATCGTC
GGCGGCGCGC TGGTCGTGAT CGTCTGCGGG ACAGCGTTCG CGCAGGTCAG GGCCGTGGTG
CCGCTCATCC TGCTCGGCGT GTTGATCAGC TTCGCCGGCC AGATCATCTC GGTGTGCTAC
CACGCTTACC AGGCCGAGTT GTTCCCGACG GCCGTGCGGT GCCGCGCCAA TGGGATCGTG
TACTCGGCCA GCCGGGTCGG CGCGATGATG TCGGGTTTTG CGATCGCGTT CCTGCTTCGC
GATTTCGGGT TGCCCGGGGT ATTCGCCGGC ATCACGGCGT GCATGCTGGC GGTCGCGGTA
TCGATCGGGT TCTTCGGGCC GAAGACCAAC GGCCTGCGCC TCGAGGAACT GAACCGTTGA
 
Protein sequence
MQPTVTADSR PHDSPFIDVD VMPGAAIAAR MDRLPITRHL WMLVLLISLG GFFEVYDLIF 
TGYIAPGMAK SGVLQTTTHA FFGFTGIAGF IAATFAGLFV GTFGLGWMPD RYGRRAVFTV
SLLWYSIGSV IMAFQTTAEG MILWRFITGI GVGVEIITID SYVTELVPQQ MRGRAMAFNQ
SVMFAAAPVA AILSYWLVPT TMLGIDGWRV VVLAGALGAL LVWFIRRGVP ESPRWLAMHG
QVARSDAIVR HIEAIVERQS GQPLPPPSPI VEQPRHRRAS LAELWQPPYR SRLVMLIVFN
FCQAIGYYGF ANWVPTLLIS QGITVTKSLL YSFIIAFALP VGPLLAMAVA DRIQRKYLIV
GGALVVIVCG TAFAQVRAVV PLILLGVLIS FAGQIISVCY HAYQAELFPT AVRCRANGIV
YSASRVGAMM SGFAIAFLLR DFGLPGVFAG ITACMLAVAV SIGFFGPKTN GLRLEELNR