| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5964 |
|---|
| Symbol | |
|---|
| ID | 6182256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 514434 |
|---|
| End bp | 515717 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641689094 |
|---|
| Product | type III effector Hrp-dependent outers |
|---|
| Protein accession | YP_001815953 |
|---|
| Protein GI | 172065241 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGA ACGCGGTCGC ACAGCACGCG GCACGGCTGC TGATCGTCGC CGACGACCTG
TCGGGCGCGG CCGATTGCGC GGTGGCCGGG CTGCATCACG GCTTGACGGC GATGGTCCTG
CTCGACACCG AGCACGCGCC GGCGCCGACG AATGGCGTGG ACATCCTGTC GGTCGACGTG
GACTCGCGCC GCGCATCGAA GGACGAGGCC GCCCGACGCA ACGTCGCTGC CATCGAGTCG
CTGTCGCATT CCGACACGCG CATCTACAAG AAGGTGGACT CGACGCTGCG AGGCAATGTC
GCGACGGAGG TGGCCGCGCT GGCGTCGCAT CTTGGCATGG CGATCGTGTG CCCGGCCTAC
CCGGCATCCG GCCGCACCAC CCGCGACGGG CGGCAATGGG TGCGCGGCGT GCCGGTCGAA
GCCAGCGAAT ACTGGCGCAA CGAGAACATC CGGGGCAAGG CGGACCTGGT TGCGCTGCTC
TGCGCCGAAC ATCTGCGCGT CGCCTACGCG GCAATCGGCA CGGTGCGCGC CGAACCGGGC
GCGCTCGCGG CGTGCCTGCG GGAAATGCAA TCCGAGGGCG CGCAGGCCGT CGTGTGCGAT
GCGGAGTCCG ACGATGATCT GCAACGCATT GCGCGCGCAT CCGCGACGCT CGACAACGTG
TTCTGGGTCG GCTCGGCCGG CCTGGCCCCT GCAGTCATCG AAGCGCTGGA GCCGCGCCGC
GGCATCGCCG AACCGGCGGC CGCCGGTGAC GATCCGCAAG GACCGGTGCT CACGATCGTC
GGCAGCATGT CGAGCATCTC GCATGCACAG GTGGAGTACC TCAAGGCCAA CGCCGGTGCC
AGTCTCGTTG CGCTCGAGGT CGCCGTCTCC GCGCTGGATG ATCCGCGCAG CGACGTCACG
ACGGCCGTAT GCAACGCGCT ACGCCACGGC CGGCACGTGG TGGTCTCGAT GAGCCAGACG
CAGCGCGGCG ACGTGAACGA CGGCCTGCTG TTCTGCAATC GCCTTGCGTC GCTGCTTGCG
CCTGCCGTGC GCCACGCAGG CGCGATCATC GCGACCGGCG GTGAAACGGC GCGCGCGCTG
CTTATCGCGG CCGGCGCGAG CGCATTGCGC GTCGTCGACG AAATCGAGGA CGGTATGCCG
CTGCTCGAAT GCCGGCTGCA GGGAAAGACC TTCCCCGTCG TGACCAAGGC CGGCGGCTTC
GGCCAGCCCG GGTCGATCCA TCACGCGTGG CGCCGGCTTG CGAATGAAGG CAAGACGGCC
AATACCGCTC AAACCAATTT GTGA
|
|---|
| Protein sequence | MNANAVAQHA ARLLIVADDL SGAADCAVAG LHHGLTAMVL LDTEHAPAPT NGVDILSVDV
DSRRASKDEA ARRNVAAIES LSHSDTRIYK KVDSTLRGNV ATEVAALASH LGMAIVCPAY
PASGRTTRDG RQWVRGVPVE ASEYWRNENI RGKADLVALL CAEHLRVAYA AIGTVRAEPG
ALAACLREMQ SEGAQAVVCD AESDDDLQRI ARASATLDNV FWVGSAGLAP AVIEALEPRR
GIAEPAAAGD DPQGPVLTIV GSMSSISHAQ VEYLKANAGA SLVALEVAVS ALDDPRSDVT
TAVCNALRHG RHVVVSMSQT QRGDVNDGLL FCNRLASLLA PAVRHAGAII ATGGETARAL
LIAAGASALR VVDEIEDGMP LLECRLQGKT FPVVTKAGGF GQPGSIHHAW RRLANEGKTA
NTAQTNL
|
|---|
| |