Gene BamMC406_5956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5956 
Symbol 
ID6182248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp505291 
End bp506037 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content63% 
IMG OID641689086 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001815945 
Protein GI172065233 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGCTCA AGAACAAGTC CGCGTTGATC ACGGGCGGAA CCAGCGGCAT CGGTCTTGCC 
ACCGCGAAGC TGTTCATTGC GGAAGGCGCG CGAGTAGCGG TCACCGGTCG CGACGATTCC
GTATTCGAGC ACGTGAAGGC CGAACTTGGC GAGCATGCGC TCGTACTCAA GGGCGACGTG
CGTTCGATCC AGGACATGCG AGCGATCGCC GCCGACGTAA ACGCGCAATT CGGCGGGCTG
GATGTCGTGT TCGCCAACGC CGGCTGGGCG CTCCCGTCCG CGGTCGACGA CATCGACGAC
AAACTCTACG ACGAGATCAT GGACGTCAAC GTCAAGGGTG TGGTGTTCAC GCTTCAAACG
GCGCTGCCGT ACTTGCGGGA AGGTTCCTCA GTGATCCTCA ACACGTCGTT CGTCGCGCAG
ACCGGCAAGC ACGGCATCTC GTTGACTGCC GCGGCGAAGG CCGCCGTGCG ATCGCTCGCC
CGCAGCTGGT CCTACGAGTT TCTCGACCGG AAAATCCGCT TCAACGCGAT CGCGCCCGGC
GTGATGAACA CGCCGTTGAT CACCAGGTGG GGCATGTCCG ACGAATGGGT TCGCGACCGT
CGGGCCGAGT TCGCCGCGAC GATTCCGGTG GGTCACCTGG GCAAGGCCGA GGACATTGCC
TACGCGGCCC TATATCTGGC CAGCGACGAA TCCTCCTACG TCGTCGGCAC CGAACTGGTC
GTCGATGGCG GTGCGTCGCA GCTTTGA
 
Protein sequence
MRLKNKSALI TGGTSGIGLA TAKLFIAEGA RVAVTGRDDS VFEHVKAELG EHALVLKGDV 
RSIQDMRAIA ADVNAQFGGL DVVFANAGWA LPSAVDDIDD KLYDEIMDVN VKGVVFTLQT
ALPYLREGSS VILNTSFVAQ TGKHGISLTA AAKAAVRSLA RSWSYEFLDR KIRFNAIAPG
VMNTPLITRW GMSDEWVRDR RAEFAATIPV GHLGKAEDIA YAALYLASDE SSYVVGTELV
VDGGASQL