Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5956 |
Symbol | |
ID | 6182248 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | - |
Start bp | 505291 |
End bp | 506037 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641689086 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001815945 |
Protein GI | 172065233 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGCTCA AGAACAAGTC CGCGTTGATC ACGGGCGGAA CCAGCGGCAT CGGTCTTGCC ACCGCGAAGC TGTTCATTGC GGAAGGCGCG CGAGTAGCGG TCACCGGTCG CGACGATTCC GTATTCGAGC ACGTGAAGGC CGAACTTGGC GAGCATGCGC TCGTACTCAA GGGCGACGTG CGTTCGATCC AGGACATGCG AGCGATCGCC GCCGACGTAA ACGCGCAATT CGGCGGGCTG GATGTCGTGT TCGCCAACGC CGGCTGGGCG CTCCCGTCCG CGGTCGACGA CATCGACGAC AAACTCTACG ACGAGATCAT GGACGTCAAC GTCAAGGGTG TGGTGTTCAC GCTTCAAACG GCGCTGCCGT ACTTGCGGGA AGGTTCCTCA GTGATCCTCA ACACGTCGTT CGTCGCGCAG ACCGGCAAGC ACGGCATCTC GTTGACTGCC GCGGCGAAGG CCGCCGTGCG ATCGCTCGCC CGCAGCTGGT CCTACGAGTT TCTCGACCGG AAAATCCGCT TCAACGCGAT CGCGCCCGGC GTGATGAACA CGCCGTTGAT CACCAGGTGG GGCATGTCCG ACGAATGGGT TCGCGACCGT CGGGCCGAGT TCGCCGCGAC GATTCCGGTG GGTCACCTGG GCAAGGCCGA GGACATTGCC TACGCGGCCC TATATCTGGC CAGCGACGAA TCCTCCTACG TCGTCGGCAC CGAACTGGTC GTCGATGGCG GTGCGTCGCA GCTTTGA
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Protein sequence | MRLKNKSALI TGGTSGIGLA TAKLFIAEGA RVAVTGRDDS VFEHVKAELG EHALVLKGDV RSIQDMRAIA ADVNAQFGGL DVVFANAGWA LPSAVDDIDD KLYDEIMDVN VKGVVFTLQT ALPYLREGSS VILNTSFVAQ TGKHGISLTA AAKAAVRSLA RSWSYEFLDR KIRFNAIAPG VMNTPLITRW GMSDEWVRDR RAEFAATIPV GHLGKAEDIA YAALYLASDE SSYVVGTELV VDGGASQL
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