Gene BamMC406_5924 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5924 
Symbol 
ID6182285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp465161 
End bp466123 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content65% 
IMG OID641689055 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_001815914 
Protein GI172065202 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.39101 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATTCA TCAGGAAGCT GGCGGCCGGC GCAATCGTCG CCGCGGCGAC GGTGCTGGCC 
ACCGGCGCGC ACGCGCAGCA AAAACCGATC ACGCTCGGGT TCTCGCAGGT CGGCGCGGAG
AGCGCATGGC GCACGGCGAA CACCGTATCG GTGAAGAGCG CGGCGAAGGA CGCCGGCATC
AACCTGAAAT TCTCGGACGC GCAGCAGAAG CAGGAGAACC AGATCCGCGC GATCCGCTCG
TTCATCGCGC AGAAGGTCGA CGTGATCGCG TTCTCGCCGG TCGTCGAGTC GGGCTGGGAG
CCGGTGCTGA CCGAAGCGAA GGCCGCGCAT ATCCCGGTGA TCCTGACCGA TCGCGGCGTC
GACGTGAAGG ATCCGTCGCT GTACGTGACG ATGATCGGCT CCGACTTCCT CGAGGAAGGG
CGGCGCGCCG GCCACTGGAT GGAAGAGCGC TACAAGAACG ACGCGGGCCC GATCAACATC
GTCGAGCTGC AGGGCACGGT CGGCTCCGCG CCGGCCAACG ATCGCCGCGC GGGCCTGCTG
GAAGTGATCA AGAGCAATCC GAAGTTCAAG GTGATCGCGT CGCAAAGCGG CGACTTCACG
CTCGCCGGCG GCAAGCAGGT GATGGAAGCG TTCGCGAAGA CCTACGGCAA GCAGATCAAC
GTCGTCTACG CGCACAACGA CGACATGGCG CTCGGCGCGA TCCAGGCGAT GGAAGAAGCC
GGCATCAAGC CCGGCAAGGA CGTGAGCGTG GTGTCGTTCG ATGCGACCAA GGGCGGCTTC
CAGGCGATGG TCGCGGGCAA GATCAACGTC GACGTCGAAT GCAGCCCGCT GCTCGGCCCG
CAGCTGATGA CGGCGGTGAA GGACGTGGTC GCCGGCAAGC AGTTGCCGAA GCGCATCGTC
ACGAATGAGA CGGTGTTCCC GATGAACGTC GCGGCGCAGG TGCTGCCGAC CCGCAAGTAC
TGA
 
Protein sequence
MTFIRKLAAG AIVAAATVLA TGAHAQQKPI TLGFSQVGAE SAWRTANTVS VKSAAKDAGI 
NLKFSDAQQK QENQIRAIRS FIAQKVDVIA FSPVVESGWE PVLTEAKAAH IPVILTDRGV
DVKDPSLYVT MIGSDFLEEG RRAGHWMEER YKNDAGPINI VELQGTVGSA PANDRRAGLL
EVIKSNPKFK VIASQSGDFT LAGGKQVMEA FAKTYGKQIN VVYAHNDDMA LGAIQAMEEA
GIKPGKDVSV VSFDATKGGF QAMVAGKINV DVECSPLLGP QLMTAVKDVV AGKQLPKRIV
TNETVFPMNV AAQVLPTRKY