| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5923 |
|---|
| Symbol | |
|---|
| ID | 6182284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 463587 |
|---|
| End bp | 464663 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641689054 |
|---|
| Product | DNA topoisomerase |
|---|
| Protein accession | YP_001815913 |
|---|
| Protein GI | 172065201 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3569] Topoisomerase IB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.813187 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGC CCACGCCCCG CGGTGCCGCC GAAGCCCTTG CAGCCGCCGT CGCGAGTTCG
ACCGTGCGGC TGCGCCACGT CGACGACCGC CGCCCCGGCT ACACGCGGCG GCGGCTGCGC
AACGGTTTCG CGTACTACAC GAAGGACGGT GAACGGATCC GCGACGCCGA CGAAATCTCC
CGCATCAACG CGCTCGCGAT TCCGCCCGCG TACACCGACG TCTGGATCTG CACGGACCCC
AACGGTCATT TGCAGGCGAC CGGCCGCGAT GCGCGCGGAC GCAAGCAATA CCGCTATCAC
CCGCTGTGGC GCGAGACGCG CGACGCGAAC AAGTACGCGC GGATGGCGGC CTTCGCCCGC
GCGCTGCCGC GCATCCGTGC GCGTGTCGAC CGCGATCTCG CGCTACCGGG GATGCCGCGC
GACAAGATCG TCGCGACGAT CGTGCGGCTG CTCGACACGA CGCTCGCGCG GATCGGCAAC
GCCGAATATG CGCGCGAGAA CGCGTCGTAC GGGCTGACGA CGCTGCGCAA GCGCCACGTG
ACGATCCGGC CGGGACAGGT GCGCCTGCGC TTCACGGGCA AGAGCGGCAT CGAGCACGAC
GTGACCGTCG AGGATCCGCG CATCGGCCGC ATCGTGCGGC GCTGCGCGGA ACTGCCGGGG
CACGAGTTGT TCCAGTATCT GGACGACGAC GGCGTGCGCC ATTCCGTCGG CTCGTCCGAC
GTGAACGACT ATCTGCGCGA CGCCGCGGGA GCGGAGTTCA CCGCGAAGGA TTACCGGACG
TGGGCGGGCA GCGTGCAGGC GCTTGCGCTG TTGAGGCGCA TCCCGCATCA GGGCGTCACG
CATGCGCGCA AGCAGATCGT CGAGACGGTG CGGACCGTCG CCGACACATT ACGCAACACG
CCGGCCGTGT GCCGACGCTG CTACATCCAT CCGGTGGTGC TCGATACGTT CGAGGCCGGG
TTGCTCGCGA CGCTGGAGGT GCGCCGCACG CCGAGGGGGC TGCGTGCGGA TGAGGCGGCG
TTCGCGGCGT TGCTCGAGCA GGCTGCGCGC CGCGATCGAC GACGTACGAG TCGATAA
|
|---|
| Protein sequence | MKKPTPRGAA EALAAAVASS TVRLRHVDDR RPGYTRRRLR NGFAYYTKDG ERIRDADEIS
RINALAIPPA YTDVWICTDP NGHLQATGRD ARGRKQYRYH PLWRETRDAN KYARMAAFAR
ALPRIRARVD RDLALPGMPR DKIVATIVRL LDTTLARIGN AEYARENASY GLTTLRKRHV
TIRPGQVRLR FTGKSGIEHD VTVEDPRIGR IVRRCAELPG HELFQYLDDD GVRHSVGSSD
VNDYLRDAAG AEFTAKDYRT WAGSVQALAL LRRIPHQGVT HARKQIVETV RTVADTLRNT
PAVCRRCYIH PVVLDTFEAG LLATLEVRRT PRGLRADEAA FAALLEQAAR RDRRRTSR
|
|---|
| |