Gene BamMC406_5901 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5901 
Symbol 
ID6182484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp440675 
End bp441799 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content67% 
IMG OID641689032 
Productpyrroloquinoline quinone biosynthesis protein PqqE 
Protein accessionYP_001815891 
Protein GI172065179 
COG category[R] General function prediction only 
COG ID[COG0535] Predicted Fe-S oxidoreductases 
TIGRFAM ID[TIGR02109] coenzyme PQQ biosynthesis protein E 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.630073 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACGA CACCCGCACC GACCCGGCCG TCCACGCCGC TGTGGCTGCT GGCCGAACTC 
ACGTATCGCT GTCCGCTGCA TTGCGCGTTC TGCTACAACC CGGTCGATTT CGCGACGCAC
GGCACCGAAC TCGATACCGA CGCATGGCGC ACGGTGATCA GCGATGCGCG CGCGCTCGGC
GCCGCGCAGA TCGGCTTTTC CGGCGGCGAG CCGCTGCAGC GCGACGACCT TGAGGTGCTG
GTCCAGCATG CGCGATCGCT CGGTTTCTAT ACCAACCTGA TCACGTCGGG CGTGGGCCTG
AACGCCACGC GCATCGACCG GCTCAAGGCG GCCGGGCTCG ATCATATCCA GCTGTCGCTG
CAGGATTCGA CGCGCGAGCT GAACGATTTC CTGACCAGCA CGCGCACCTT CGACCTCAAG
CGCGACGTCG GACGGCTGAT CAAGGCGCAC GGCTATCCGA TGGTGCTGAA CTGCGTGCTG
CACCGATACA ACTTGCCGCA CGTCGGCCAG ATCATCGAGA TGGCGCTCGA CCTCGGCGCG
GATTTTCTCG AACTCGCGAA TACGCAGTAC TACGGCTGGG CGATGCTGAA TCGCGACCAG
CTGATGCCGA CCGCCGAACA GCTGCGCGAA GCCGAGGAAA CGGTCAACCG CTACCGCAAG
CTCGTCGGCG AACGATGCAA GATCCTGTTC GTCGTGCCCG ACTACTTCGA GCAGCGGCCG
AAGGCCTGCA TGAACGGCTG GGGCTCGGTA TTCCTTGGCG TCGCACCGGA CGGCACCGCG
CTGCCGTGCC ACGCCGCGCG CGGGTTGCCC GGCCTCGTGC TGCCGAACGT GCGCGACCGC
TCGCTGAAGG AGATCTGGTA CGACAGCGAC GCGTTCAACG CGTTTCGCGG CGACGGCTGG
ATGCGCGACC CGTGCCGCAC CTGCGACGAG CGCCATACGG ATCATGGCGG GTGCCGGTGC
CAGGCGTACA TGCTGGCGGG CGATCCGGCG GAGGCCGACC CGGTGTGCGC GAAGTCCGCA
CATCACGGCC AAGTCGAGCA GGCCGTGCAA TTCGCGCGGC GGGCGGGGCG GCAGGACGAG
CGTCCGCTGA TCTTTCGCAG TGTGGCTAAT TCGGTCGGGC GCTGA
 
Protein sequence
MDTTPAPTRP STPLWLLAEL TYRCPLHCAF CYNPVDFATH GTELDTDAWR TVISDARALG 
AAQIGFSGGE PLQRDDLEVL VQHARSLGFY TNLITSGVGL NATRIDRLKA AGLDHIQLSL
QDSTRELNDF LTSTRTFDLK RDVGRLIKAH GYPMVLNCVL HRYNLPHVGQ IIEMALDLGA
DFLELANTQY YGWAMLNRDQ LMPTAEQLRE AEETVNRYRK LVGERCKILF VVPDYFEQRP
KACMNGWGSV FLGVAPDGTA LPCHAARGLP GLVLPNVRDR SLKEIWYDSD AFNAFRGDGW
MRDPCRTCDE RHTDHGGCRC QAYMLAGDPA EADPVCAKSA HHGQVEQAVQ FARRAGRQDE
RPLIFRSVAN SVGR