| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5885 |
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| Symbol | |
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| ID | 6182468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 418055 |
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| End bp | 419407 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641689016 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001815875 |
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| Protein GI | 172065163 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0720874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTCG CGATCCTGTC CGTCAGTTTT CTGATTTTCC TCGTGCTTGG CGTGCCCGTC
TCGTTCGCGC TCGGCATTGC CTGCGTGCTG ACCTATATGG TCGAAGGGCT GCCGATCGCG
ACCGCGATGC AGTCGATGAT CTCGGGGATG AACGCGTTCT CGTTCCTCGC GGTGCCGTTC
TTCATCTTTT CCGGCGAGCT GATGCTGCAT GGCGGCATCG CGGACCGGAT CCTGCGCTTC
GCGCAGGCGA CCGTCGGCCA TTTCCGCGGC GGCCTCGGGA TGGCCAACGT GGTCGCCTGC
ACGCTGTTCG GCGGCGTGTC GGGCTCGCCG ACCGCCGATA CGTCGGCGAT GGGCGGCGTG
GTGATTCCGC TGATGAAGCG CGAAGGCTAC AGCGCGGCTT ACGCGGTCAA CGTGACGACG
CACGCTTCGC TCGCCGGCGC GCTGATGCCG ACCTCGACCA ACATGATCAT CTACGCGTTC
GCCGCGCAGG GGATCACGGG GATGCTGCAC GGCCAGCAGG TGAGCGGCGT GTCGATCGGC
GACCTGCTGT TCTCCGGGCT GCTGCCGGTG TTGTGGGTGA TGGGCTTCGT GCTCGTCGCC
GCGTACTGGC AAGCGGTGCG TCACGGCTAT CCGCGCCGTG AAGACGGCTC GTCCGCGCTG
CCGTCGTTCC CGGGCTGGTA TGCGGTGCTG CGCAGCTTCG TCGGCGCGGT GCCGGGCCTG
ATGGTGATCG CGATCATTCT CGTGTGTGTC GCGAAGGGGA TTGCTACCGC GACGGAAGCG
GCCGCGATCG CCGTCGTGTA TTCGCTCGTG CTGACCGCGA TCGTGTACCG CACGCTGACC
GTCGCGAAGC TGCGCCGTGC GCTGTCGCAT GCGGCGCGCA CGACGGGCGT CGTGCTGCTG
CTGATCGCCG TGTCGAACAT GCTGCGCTTC CAGATGTCGT ACCTGGAGAT TCCGGATGCG
ATCGAGGGGC TGCTGAAGCA GTCGACCGCC GCGCCGTGGC TGATGCTGCT GTACATCAAC
ATCATCCAGG TGTTCCTCGG CACGTTCGTC GACATGGCCG CGCACATCCT GATCACGACG
CCGCTGTTCC TGCCGATCGC GATGGCGTGC GGCGTCGGGC CGGTGCAGTT CGGGATCATG
CTGCTGCTGA ACTGCTCGCT CGGCCTCGTG CACCCGCCGA TCGGCTCGGT GCAGTTCGTC
GGCTGCGCGA TCGGCAATGT GTCGATCGGC GAGACGACGA AGATGGCGTG GCCGTACTAC
CTCGCGATCT TCAGTGCGAT CAACATCGTC ACGTACATGC CGTTCTTCTC GACCTGGCTG
CCGAGCCTGA TCAGCGGCCA TGCGGTGTTC TGA
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| Protein sequence | MELAILSVSF LIFLVLGVPV SFALGIACVL TYMVEGLPIA TAMQSMISGM NAFSFLAVPF
FIFSGELMLH GGIADRILRF AQATVGHFRG GLGMANVVAC TLFGGVSGSP TADTSAMGGV
VIPLMKREGY SAAYAVNVTT HASLAGALMP TSTNMIIYAF AAQGITGMLH GQQVSGVSIG
DLLFSGLLPV LWVMGFVLVA AYWQAVRHGY PRREDGSSAL PSFPGWYAVL RSFVGAVPGL
MVIAIILVCV AKGIATATEA AAIAVVYSLV LTAIVYRTLT VAKLRRALSH AARTTGVVLL
LIAVSNMLRF QMSYLEIPDA IEGLLKQSTA APWLMLLYIN IIQVFLGTFV DMAAHILITT
PLFLPIAMAC GVGPVQFGIM LLLNCSLGLV HPPIGSVQFV GCAIGNVSIG ETTKMAWPYY
LAIFSAINIV TYMPFFSTWL PSLISGHAVF
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