| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5883 |
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| Symbol | |
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| ID | 6182781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 416489 |
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| End bp | 417475 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641689014 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001815873 |
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| Protein GI | 172065161 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.43701 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCACC GATTCCCCCG CTCCCGTACC GCACTGGCCG TCGCGCTGAT GGCCGGCTTC
GCGATGTCCG CGCAGGCCCG CGTATTCCGC TCGGCGGACG TGCACGGCGA CAGCTTCCCG
ACCAACATGG CGGTCAAGTT CATGGGTGAC GAGTTGTCGA AGCTCACGGG CGGCAAGGAC
TCGATCAAGG TGTTCGGCAA CAGCGCGCTC GGCTCCGAGA AGGACACGGT CGATCAGGTG
CGGATCGGCG CGATCGACAT GGCGCGCGTG AACGGCGCGT CGTTCAACGA GATCGTGCCG
GAGTCGCTGA TCCCGTCGTT CCCGTTCCTG TTCCGCGACG TCGACCATTT CCGCAAGGCG
ATGTACGGCC CGGCCGGCCA GAAGATCCTC GACGCGTTCG CGGCGAAGGG AATGATCGCG
CTGACGTTCT ACGAGAGCGG CGCGCGCTCG ATCTATGCGA AGCGTCCGGT GCGCACGCCG
GCGGACATGA AGGGGCTGAA GGTGCGCGTG CAACCATCGG ACCTGATGGT CGACGAGATC
CGGGCGATGG GCGGCACGCC GACGCCGATG CCGTTCGCCG AGGTGTACAC GGGCCTGAAG
ACGGGCCTGG TCGACGCGGC GGAAAACAAT CTGCCGTCGT ACGAGGAAAC CAAGCACTTC
GAGGTGGCGC CCGACTACTC GGAGACGCAG CACGCGATGA CGCCGGAAGT GCTGGTGTTC
TCGAAGAAGA TCTGGGACAC GCTGTCGCCG CAGGAGCAGG CCGCGATCAG GAAGGCCGCG
GCCGATTCGG TGCCGTACTA CCAGAAGCTG TGGACCGCGC GTGAGGCATC GGCGCAGCAG
GCGGTGACGA AGGGCGGCGC GAAGATCCTG CCGGCCGCGC AGGTCGACCG CGCGGCCTTC
GTGAAGGCGA TGCAGCCGCT GTGGACGAAG TACGAGAAGA CGCCGCAGAT GAAGCAGATC
GTCGACGAGA TCGAGGCAAC CAAGTGA
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| Protein sequence | MTHRFPRSRT ALAVALMAGF AMSAQARVFR SADVHGDSFP TNMAVKFMGD ELSKLTGGKD
SIKVFGNSAL GSEKDTVDQV RIGAIDMARV NGASFNEIVP ESLIPSFPFL FRDVDHFRKA
MYGPAGQKIL DAFAAKGMIA LTFYESGARS IYAKRPVRTP ADMKGLKVRV QPSDLMVDEI
RAMGGTPTPM PFAEVYTGLK TGLVDAAENN LPSYEETKHF EVAPDYSETQ HAMTPEVLVF
SKKIWDTLSP QEQAAIRKAA ADSVPYYQKL WTAREASAQQ AVTKGGAKIL PAAQVDRAAF
VKAMQPLWTK YEKTPQMKQI VDEIEATK
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