| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5865 |
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| Symbol | |
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| ID | 6182764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 395877 |
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| End bp | 397913 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641688997 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001815856 |
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| Protein GI | 172065144 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC CCGCCCCCTC CCCCTGGTCC GCGCTCGACA CCGCGATCGC CCGTGGACGC
GACGCGCTGA TGCGCCTTCA GCAGCCCGAC GGCAGCTGGT GTTTCGAACT CGAATCCGAC
GCGACGATCA CCGCGGAATA CATCCTGATG ATGCATTTCA TGGACAAGAT CGACGACGTG
CGCCAGGAGA AGATGGCGCG CTACCTGCGC GCGATCCAGC GGCTCGACAC GCACGGCGGG
TGGGACCTGT ACGTCGACGG CGACCCGGAC GTGTCGTGCA GCGTGAAGGC GTACTTCGCG
CTGAAGGCCG CCGGCGACAG CGAGCATGCG CCGCACATGG TCCGCGCGCG CGACGCGATC
CTCGCGCTCG GCGGCGCGGC ACGCTCGAAC GTGTTCACGC GGATCCTGCT CGCGACGTTC
GGCCAGGTGC CGTGGCGCGC GACGCCGTTC ATGCCGATCG AATTCGTGCT GTTCCCGAAG
TGGGTACCGA TCTCGATGTA CAAGGTCGCG TACTGGGCCC GCACGACGAT GGTGCCGCTG
CTCGTGCTGT GCTCGCTGAA AGCGCGTGCG CGCAATCCGC GCAACATCGC GATCCCCGAG
CTGTTCGTCA CCCCGCCCGA CGAGGAGCGT CACTACTTCC CGCCCGCGCG CGGGATGCGC
CGAGCGTTCC TCGCGCTCGA CCGCGTGGTG CGCCATGTCG AGCCGCTGCT GCCGAAACGC
CTGCGGCAGC GCGCGATCCG GCATGCGCAA GCGTGGTGCG CGGAGCGCAT GAACGGCGAA
GACGGCCTCG GCGGAATCTT TCCGCCGATC GTGTACAGCT ATCAGATGAT GGACGTGCTC
GGCTACCCGG ACGATCATCC GCGCCGCCGC GACTGCGAGA ACGCGCTGGA GAAGCTGCTG
GTCACGCGGA CGGACGGCAG CATGTACTGC CAGCCGTGCC TGTCGCCGGT ATGGGACACC
GCGTGGAGCA CGATGGCGCT CGAGCAGGCC CGTGCCGTGG CCGTGCCGGA AGCCGGCGCG
CGCGCGAGCG CACTGGACGA ACTCGACGCA CGCATCGCGC GCGCGTACGA CTGGCTGGCC
GAGCGCCAGG TGAACGACCT GCGCGGCGAC TGGATCGAGA ACGCGCCCGC CGATACGCAA
CCGGGCGGCT GGGCATTCCA GTACGCGAAC CCGTACTACC CCGACATCGA CGACACTGCG
GTCGTCACCG CGATGCTCGA CCGCCGCGGC CGCACGCATC GCAACGCGGA CGGCTCGCAT
CCGTATGCGG CGCGTGTCGC GCGCGCGCTC GACTGGATGC GCGGGCTGCA ATCGCGCAAC
GGCGGCTTCG CGGCCTTCGA CGCCGACTGC GACCGCATGT ACCTGAACGC GATTCCGTTC
GCCGATCACG GCGCGCTGCT CGATCCGCCG ACCGAGGACG TGTCGGGCCG CGTGCTGCTG
TGCTTCGGCG TCACGAAGCG CGCGGCCGAC CGCGCGTCGC TCGCGCGCGC GATCGACTAC
GTGAAGCGCA CGCAGCAGCC CGACGGCAGC TGGTGGGGCC GCTGGGGCAC GAACTACCTG
TACGGTACGT GGAGCGTGCT GGCCGGGCTC GCGCTTGCGG GCGAGGACCC GTCGCAGCCG
TACATCGCCC GCGCGCTCGC GTGGCTGCGC GCACGTCAGC ATGCGGACGG CGGCTGGGGC
GAGACGAACG ACAGCTACAT CGACCCTACG CTCGCCGGCA CCAATGCGGG CGAAAGCACG
TCGAACTGCA CCGCGTGGGC GCTGCTCGCG CAGATGGCGT TCGGCGACTG CGAATCGGAA
TCGGTCAGGC GCGGCATCGC GTATCTGCAA TCCGTGCAGC AGGACGACGG CTTCTGGTGG
CACCGCTCGC ACAACGCGCC GGGCTTTCCG CGCATCTTCT ACCTGAAGTA TCACGGCTAT
ACCGCGTACT TCCCGCTGTG GGCGCTTGCG CGCTATCGGC GGTTGGCTAG CGGCGTGTCG
TCGGCCGGCG TGCACGCGGT GCCCGCGTCC ACGGGCGCGG ACGCGGCGCT CGCCTGA
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| Protein sequence | MNKPAPSPWS ALDTAIARGR DALMRLQQPD GSWCFELESD ATITAEYILM MHFMDKIDDV
RQEKMARYLR AIQRLDTHGG WDLYVDGDPD VSCSVKAYFA LKAAGDSEHA PHMVRARDAI
LALGGAARSN VFTRILLATF GQVPWRATPF MPIEFVLFPK WVPISMYKVA YWARTTMVPL
LVLCSLKARA RNPRNIAIPE LFVTPPDEER HYFPPARGMR RAFLALDRVV RHVEPLLPKR
LRQRAIRHAQ AWCAERMNGE DGLGGIFPPI VYSYQMMDVL GYPDDHPRRR DCENALEKLL
VTRTDGSMYC QPCLSPVWDT AWSTMALEQA RAVAVPEAGA RASALDELDA RIARAYDWLA
ERQVNDLRGD WIENAPADTQ PGGWAFQYAN PYYPDIDDTA VVTAMLDRRG RTHRNADGSH
PYAARVARAL DWMRGLQSRN GGFAAFDADC DRMYLNAIPF ADHGALLDPP TEDVSGRVLL
CFGVTKRAAD RASLARAIDY VKRTQQPDGS WWGRWGTNYL YGTWSVLAGL ALAGEDPSQP
YIARALAWLR ARQHADGGWG ETNDSYIDPT LAGTNAGEST SNCTAWALLA QMAFGDCESE
SVRRGIAYLQ SVQQDDGFWW HRSHNAPGFP RIFYLKYHGY TAYFPLWALA RYRRLASGVS
SAGVHAVPAS TGADAALA
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