| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5831 |
|---|
| Symbol | |
|---|
| ID | 6182172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 364008 |
|---|
| End bp | 365162 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641688966 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001815825 |
|---|
| Protein GI | 172065113 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.468117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.310951 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGAA GCACTGTCGG CATGCGCTGC AAACCCCTGA TCACCGTCGC ACTCGCAGCC
GCCGCATTCG CGGCCGCGTC GGGCGCGATG GCCGACCAGG TCGTGAAGAT CGGCAGCGTC
GAACCGACGA CGGGCGGCAT TTCGCACCTG GGCAAGGACA ACGAGAACGG CGCGCGCCTC
GCGGTCGAGG AAATCAATGC GAAGGGCCTG ACGATCGGCG GCAAGAAGAT CACGCTGCAG
CTCGACGCGC AGGATGACGC GGCCGACCCG CGGCAGGCGA CGCAGGTCGC GCAGAAACTC
GTCGACGACA AGGTCGTCGC CGTCATCGGC CACCTGAACT CGGGCACGTC GATCCCGGCG
TCGAAGATCT ACAGCGACGC GGGCATCGTG CAGATCTCGC CGTCGGCCAC GAATCCGACC
TACACGCAGC AGGGCTTCAA GACGACCTAC CGCGTGGTCG CGACCGACGC GCAGCAAGGT
CCGGCACTCG CGAGCTACGC GCAGTCGAAG GGTGTGAAGA GCGTCGCGGT GATCGACGAT
TCGACCGCGT ACGGCCAGGG CCTCGCGAAC GAATTCGAGA AGAAGGCCAA GGCGCTCGGC
CTGAAGGTGC TGTCGCACGA CGCGACCAAC GACAAGGCCG TCGACTTCCG CGCGATTCTC
ACGAAGGTCA AGGGCGAGAA CCCGGACGCG ATCATGTACG GCGGCATGGA TGCCACTGGC
GGCCCGCTCG CGAAGCAGGC AAGGCAGCTC GGCCTGCGCG CGAAGATCCT GTCCGGCGAC
GGCGTATGCA CCGACTCGCT GGCCGAGCTG GCCGGCCCGG CGGCCGACAA CGTGCTGTGC
TCGCAGGCGG GCGCCGCGCT CGAGAAAATG CCGGGCGGCG CGGCGTTCCT CGCGAAGTAC
CAGAAGCGCT TCAACCAGGG CATCAAGTTC GATGCGCCGT TCGCGTACGA CGCGGTCTAC
ATCGCGGTCG ACGCGATGAA GCGGGCGAAT TCGACCGACC CGGCGAAGGT GCTCGCCGCG
ATGCCGTCGA CGAAGTACGA AGGCGTGATC GGCACGACGA CGTTCGACGC GAAGGGCGAC
CTGACGCACG GGATCATCTC GATCTACGGC TACAAGAGCG GCAAGAAGAC CTTCCTCGAC
CAGGTGAAGA TGTAA
|
|---|
| Protein sequence | MERSTVGMRC KPLITVALAA AAFAAASGAM ADQVVKIGSV EPTTGGISHL GKDNENGARL
AVEEINAKGL TIGGKKITLQ LDAQDDAADP RQATQVAQKL VDDKVVAVIG HLNSGTSIPA
SKIYSDAGIV QISPSATNPT YTQQGFKTTY RVVATDAQQG PALASYAQSK GVKSVAVIDD
STAYGQGLAN EFEKKAKALG LKVLSHDATN DKAVDFRAIL TKVKGENPDA IMYGGMDATG
GPLAKQARQL GLRAKILSGD GVCTDSLAEL AGPAADNVLC SQAGAALEKM PGGAAFLAKY
QKRFNQGIKF DAPFAYDAVY IAVDAMKRAN STDPAKVLAA MPSTKYEGVI GTTTFDAKGD
LTHGIISIYG YKSGKKTFLD QVKM
|
|---|
| |