| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5773 |
|---|
| Symbol | |
|---|
| ID | 6182518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 299955 |
|---|
| End bp | 301367 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641688909 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001815768 |
|---|
| Protein GI | 172065056 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.272956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGGA CCGAGGTATC GGCGCGCTGG CACGACGCGA TCGGCGCGGT GCACGGCATC
GAGTCGAAAT ACAAGCGGCT CGTGAAGGCG ATCGCCACCG ACATCGAAAG CGGCGCGCTC
GCACCGGGCG CGCGGCTCGC GCCGCAGCGC GACGTGGCGT CGAGCCTCGG CGTCAGCGTG
CAGACCGTCA CCAATGCCTA CAAGGAACTC GAAAGGCAGG GCCTGATCCG CTGCGAAGTC
GGGCGCGGCA GCTTCGTGGC CGCCCGCGTG ACCGAATCGA TGTCGAACTA CATCCTCGAT
ACGGCCGAGC GCGAGCTGGT CGACTTCTCG ATCGCGCGCA TCGTGCATAC GCCGGAGCAC
GATGCCGCAT GGCGGAGCGT CTGCGCAGCG ATGGCCGACA CCGACGACCA GCCATGGATC
CGCTCGTTCC GGCCGATCGC GGGCCTCGAC GCGCATCGCG AGGCTGGCGC CGCGTGGCTC
GGTTCGCTGA ACCTGCCGGT CCATCCCGAA TCGCTGCTGA TCACGAACGG CGCGGCGCAC
GGGATCTTTC TCGCGCTCGC GTCGATCGTC GGGCCGGGCG ACACCGTGCT GTGCGAGAGC
CTGACCGACC ACGGCGTGAT CGGCTCGGCG AACGTGCTCG GGTTTACGCT GAAAGGGCTC
GAGATGGACG AACATGGGAT CCGTCCCGAA CATTTCGAGG AAATGTGCGA CGGCGAGCGC
ATCAGTGCGC TCGTCTGCAC GCCGACCCTC AATAACCCGA CGGTGTCGAT GATGTCCGAT
TCGCGCCGCA AGTCGATTGC GCGCATCGCA TCACGCTACG GCGTGTACGT GATCGAGGAC
GACGTGTACG GCCCGCTCCC CGCGAAGACG GCGACGCCGA TCGCGAGCCT GATCCCGGAG
CTCGGCTTCT ACTGCACGAG CATGACGAAA TCCGTGCTGA CCGGGCTGCG CACCGGTTAT
CTCGCGATGC CGAGGCGGCT TGCGTTGCGC GTCGAGAGCG TGCTGCGCGT GAGCAGCTGG
ATGGCGACGT CGCCGATCGC GGAGATCGCG ACGCGTTGGA TCGCCGACGG CACCGCGCGC
AGGCTCGTGG AGTTGCAGCG CCAGCGGCTC GCGGCGCGTC AGGAGATGGT GAAGGCCGCG
CTTGGCCCCT ATGTGCTGGG TGCGCATCCG AATGCATTGT CAGCGTGGCT GCGCGTGCCG
GACTACTGGC AGGCCGACCG GCTCGTGCGC GAATTGCGTA CCCGCAAGAT CGCGGTGACG
TCGCCCGACC CGTTCCTCGT CGGCGGCACG GAGCGGCCGA ACGCGGTGCG CGTGTGCATC
GGCGCGGAGA CGACGGATGC CGCATGCAAC GCCGCGCTCC AGACCATCGC GGGCGTGTTC
GAGCAGTATC CGCACGTGCA CGATTTTCAC TGA
|
|---|
| Protein sequence | MGRTEVSARW HDAIGAVHGI ESKYKRLVKA IATDIESGAL APGARLAPQR DVASSLGVSV
QTVTNAYKEL ERQGLIRCEV GRGSFVAARV TESMSNYILD TAERELVDFS IARIVHTPEH
DAAWRSVCAA MADTDDQPWI RSFRPIAGLD AHREAGAAWL GSLNLPVHPE SLLITNGAAH
GIFLALASIV GPGDTVLCES LTDHGVIGSA NVLGFTLKGL EMDEHGIRPE HFEEMCDGER
ISALVCTPTL NNPTVSMMSD SRRKSIARIA SRYGVYVIED DVYGPLPAKT ATPIASLIPE
LGFYCTSMTK SVLTGLRTGY LAMPRRLALR VESVLRVSSW MATSPIAEIA TRWIADGTAR
RLVELQRQRL AARQEMVKAA LGPYVLGAHP NALSAWLRVP DYWQADRLVR ELRTRKIAVT
SPDPFLVGGT ERPNAVRVCI GAETTDAACN AALQTIAGVF EQYPHVHDFH
|
|---|
| |