| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5727 |
|---|
| Symbol | |
|---|
| ID | 6181911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 238993 |
|---|
| End bp | 240666 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641688858 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001815722 |
|---|
| Protein GI | 172065010 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGATG GAGCAACTGC CCGGGAGGTG CCGGCCTACG CCGACGCCGT GGCCGGCTTC
CGTATCGAGA CCGCCGCCGC ATATCTGCAC GGCGACCTGG AGCAGGGCCT GAACGCCTGC
GTCGAATGCT GCGACCGGCA TGCGGCGGCG GACCCGAACG CGATCGCACT CGACTGGATC
GACGCTGGCG GCAGGCATCG CAGTTTCACG TTCGCGCAGA TGCAGGCGCT GTCGGCGCGC
GTCGCGAACC TGCTGGTCGA GCAGGGCGTG AAGCCGGGTG ACGTGGTGGC CGGCCTGTTG
CCGCGCACGC CCGAACTCGT CGCGACGATC CTCGGCACGT GGCGCGCGGG CGCCGTCTAC
CAGCCGCTTT TCACCGCGTT CGGACCGAAG GCGATCGAGC ACCGGCTGCG CATGAGCGAT
GCGCGGCTGA TCGTCACCAA CATCGCGAAT CGCGCGAAGC TCGACGAGAT CGTGGATTGC
CCGCCGGTGG CGACGGTGCG CGAGCCGGGC GACACGCTGC CGGCCCGCGA TATCGATTTC
CGTACGGCAC TCGATGCGCA GTCAGGCACG TTCGAACCGG TGCTGCGCAA GGGGACCGAC
CTGTTCATGA TGATGTCGAC GTCGGGCACG ACGGGTTTGC CGAAGGGCGT GCCGGTGCCG
CTGCGCGCAC TGCTTGCGTT CGGCGCATAC ATGCGCGACG CGGTGGACCT GCGCCCCAGC
GACCGCTTCT GGAACATCGC CGATCCGGGT TGGGCATACG GTCTCTACTA CGCGATCACG
GGCCCGCTGC TGCTCGGCCA TGCGACGACG CTGTACGAAG GCAGCTTCAC CGTCGACAGC
ACCTGCGACG TGATCGAACG GCTCGGCATC ACGAGCCTCG CCGGTTCGCC GACCGCGTAC
CGGATGCTGA TGGCGGCCGG CACCGAAGTG GCGGCACGGC TGAAAGGGCA ACTGCGGGTC
GTCAGCAGCG CGGGCGAACC GCTGAATCCG GAAGTCGTGC GCTGGTTCCA CGCGGCGCTC
GGCGCGCCGA TCCACGATCA CTACGGCCAG ACCGAACTCG GGATGGTCGT GAACAACCAT
CACGGGCTCA CGCACGTCGT CCATGTCGGT TCGGCCGGTC TCGCGATGCC CGGCTATCGC
GTCGCGGTAC TCGACGAAGC CGGTCGCGAG CTCGGCCCGG GCGAGCCCGG TAACCTCGCG
ATCGACATCG CACGCTCGCC GCTGCTGTGG TTCACCGGCT ACTGGCAGCA GGATACGCCG
GCGATCGCGA GCGGCTACTA CCGGACCGGC GACAACGTCG AACTCGAGCC GGACGGCACC
GTGAGCTTCA TCGGCCGCGC GGACGACGTG ATCACGTCGT CCGGTTACCG GATCGGCCCG
TTCGACGTGG AAAGCGCGCT GATCGAGCAT CCGGCCGTCA GCGAGGCCGC GGTGATCGGC
GTGCCGGATC CGGAGCGCAC GGAGATCGTC AAGGCGTTCG TCGTGCTGTC GAAAGGTTTT
GAAGGCACGC CGGCGCTGGC CGACGAACTG AGCCAGCACG TGAAGCGGCG GCTGTCGGCG
CACGCGTATC CGCGCGCGAT CGACTTCGTC GACGCGCTGC CGAAAACCCC GAGCGGCAAG
ATCCAGCGCT TCGTTTTGCG CAAGATGGAA GCCGAGAAGA CCGCTCAATC CTGA
|
|---|
| Protein sequence | MRDGATAREV PAYADAVAGF RIETAAAYLH GDLEQGLNAC VECCDRHAAA DPNAIALDWI
DAGGRHRSFT FAQMQALSAR VANLLVEQGV KPGDVVAGLL PRTPELVATI LGTWRAGAVY
QPLFTAFGPK AIEHRLRMSD ARLIVTNIAN RAKLDEIVDC PPVATVREPG DTLPARDIDF
RTALDAQSGT FEPVLRKGTD LFMMMSTSGT TGLPKGVPVP LRALLAFGAY MRDAVDLRPS
DRFWNIADPG WAYGLYYAIT GPLLLGHATT LYEGSFTVDS TCDVIERLGI TSLAGSPTAY
RMLMAAGTEV AARLKGQLRV VSSAGEPLNP EVVRWFHAAL GAPIHDHYGQ TELGMVVNNH
HGLTHVVHVG SAGLAMPGYR VAVLDEAGRE LGPGEPGNLA IDIARSPLLW FTGYWQQDTP
AIASGYYRTG DNVELEPDGT VSFIGRADDV ITSSGYRIGP FDVESALIEH PAVSEAAVIG
VPDPERTEIV KAFVVLSKGF EGTPALADEL SQHVKRRLSA HAYPRAIDFV DALPKTPSGK
IQRFVLRKME AEKTAQS
|
|---|
| |