| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5716 |
|---|
| Symbol | |
|---|
| ID | 6181968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 224536 |
|---|
| End bp | 226404 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641688847 |
|---|
| Product | cytochrome c biogenesis protein transmembrane region |
|---|
| Protein accession | YP_001815711 |
|---|
| Protein GI | 172064999 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0785] Cytochrome c biogenesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.610944 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.678998 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTCA TCGTCCTTGC CTATCTCGGC GGCGTCCTCA CGATCCTGAG CCCGTGCATC
CTGCCCGTGC TGCCGTTCGT GTTCGCGCGC GCCGACCAGC CGTTCGTCCG TACCGGCCTG
CCGCTGCTGA TCGGCATGGC GCTCACGTTC GCCGTCGTCG CGACGCTCGC CGCCGTCGGC
GGCGGCTGGG TCGCGCAGGC CAACCAGGCC GGCCGCTGGC TCGCCATCGT GCTGCTCGCG
GTGTTCGGCC TGACGCTGCT GCTGCCCCGT TTCGCCGAAC ACCTGACGCG CCCGCTCGTC
GCGGCCGGCA ACCGGCTCAC CGGTTTCGCT CAGCGCGACG GCCGCCCGGC GGGCCCCCTG
TCGTCGCTGC TGCTCGGCGT CGCGACCGGC CTGCTGTGGG CGCCGTGCGC GGGCCCGATC
CTCGGGCTCG TGCTGACCGG TGCCGCGCTG CGCGGTGCGA GCGTCGGCAC GACGGTGCTG
CTGGTCGCGT ATGCGGCCGG GGCGGCGACG TCGCTCGGCG TCGCGCTCGT GATCGGCGGC
AAGGTGTTCG CCGCGATGAA GCGCTCGCTC GGCGCCGGCG AATGGATCCG GCGCGGCATC
GGCGCGGCGC TGCTGGCCGG CGTCGGCGCG ATCGCGCTCG GCCTCGATAC GGGTGCGCTC
GCGCAGTTGT CGACGGTCAC GACGGGCAGC CTCGAGACGA AGCTCGTCGA CCGGCTCGGC
GGGCGCTCGA ACGGTGCGCC GGCCGCCCCG TCCTCCACGA GCAACACCGG CAACGCCGGT
AGCGGCACGG CGAGCGGCGC GATGATGGCC GCGGCGACGG ACGGCGCACC GGCGGCCGGG
AGCGCGATGA TGCGCACGGC CGGCACGACG CCCGCGATGC AAGCGGCCGC GCTGCCCGTC
GAAGGCACGC TGCCGTCGCT CGACGGCGCC GTGCAGTGGC TGAATTCGCC GCCGCTGACC
GCGGCCGGCC TGCGCGGCAA GGTCGTGCTC GTCGATTTCT GGACCTATTC GTGCATCAAC
TGTCTGCGCA CGCTGCCGTA CACGACCGCG TGGGCGCACA AGTACGCGCC GTACGGGCTC
GTCGTGATCG GTGTGCACGC ACCGGAGTTC GCGTTCGAGC GCGACATCGG CAACGTGAAG
AAGGCTGTGC ATGACCTCGG CATCGACTAC CCGGTCGCGA TCGACAACGG CTATGCGATC
TGGCGCGCGT TCGGCAACGA ATACTGGCCC GCGCACTACT TCGTCGACGC GCAGGGGCGG
ATCCGCCATC ACCACTTCGG CGAAGGCGAA TACGCGCAGT CGGAACGCGC GATCCAGTCG
CTGCTCGCCG AAGCCGGCCA CCCGGAAGCG CTGAACGTGC CGCTCGGGCT CACCGGCGCG
CCCGCGAAAG GCGCGCTCGC GGCGGCCGAC AGCGCGGACG TCCGCTCGCC CGAAACCTAT
GTCGGCTATG CGCGTGCGGA AGACTTCACG TCACCGGGCG GCGTCGTGCA CGACACGGCA
CACCGCTACG ACGCGCCCGC TCATCCCGAC CTGAACGACT GGGGCCTCGC CGGCACGTGG
CAGGTCGGCG CCGAGCGCGC GACGCTCGCC GCGCCGGCCG GCCGGATCGT CTACCGCTTC
CATGCGCGCG ACCTGCACCT CGTGCTCGGC CCGGGGGCGA CCGGCAAGCC GGTGCGCTTT
CGCGTGACGC TCGACGGCGC GGCGCCCGGC TCGGCCCACG GCGCCGACGT CGACGCGCAG
GGCTACGGCA CTGTCACCGG CCAACGCCTG TATCAGTTGG TGCGGCAGCC GGGCGCGATC
GCCGACCGTA CGTTCTCGAT CGAGTTTCTC GATCCGGGCG TCGACGCGTA TGCGTTCACG
TTTGGTTGA
|
|---|
| Protein sequence | MLLIVLAYLG GVLTILSPCI LPVLPFVFAR ADQPFVRTGL PLLIGMALTF AVVATLAAVG
GGWVAQANQA GRWLAIVLLA VFGLTLLLPR FAEHLTRPLV AAGNRLTGFA QRDGRPAGPL
SSLLLGVATG LLWAPCAGPI LGLVLTGAAL RGASVGTTVL LVAYAAGAAT SLGVALVIGG
KVFAAMKRSL GAGEWIRRGI GAALLAGVGA IALGLDTGAL AQLSTVTTGS LETKLVDRLG
GRSNGAPAAP SSTSNTGNAG SGTASGAMMA AATDGAPAAG SAMMRTAGTT PAMQAAALPV
EGTLPSLDGA VQWLNSPPLT AAGLRGKVVL VDFWTYSCIN CLRTLPYTTA WAHKYAPYGL
VVIGVHAPEF AFERDIGNVK KAVHDLGIDY PVAIDNGYAI WRAFGNEYWP AHYFVDAQGR
IRHHHFGEGE YAQSERAIQS LLAEAGHPEA LNVPLGLTGA PAKGALAAAD SADVRSPETY
VGYARAEDFT SPGGVVHDTA HRYDAPAHPD LNDWGLAGTW QVGAERATLA APAGRIVYRF
HARDLHLVLG PGATGKPVRF RVTLDGAAPG SAHGADVDAQ GYGTVTGQRL YQLVRQPGAI
ADRTFSIEFL DPGVDAYAFT FG
|
|---|
| |