| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5688 |
|---|
| Symbol | |
|---|
| ID | 6182098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 198279 |
|---|
| End bp | 201827 |
|---|
| Gene Length | 3549 bp |
|---|
| Protein Length | 1182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641688820 |
|---|
| Product | indolepyruvate ferredoxin oxidoreductase |
|---|
| Protein accession | YP_001815684 |
|---|
| Protein GI | 172064972 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0608745 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG GCAGATTTAC TGCGACGGCC GGCCGCGTGT ATCTGAGCGG CGTTCAGGCG
CTGGTGCGGC TGACCGTCAT GCAGCGCATG CGCGACGCGG CCGCCGGCCT TTCGACTGCG
GGTTTCGTTT CCGGCTATCG CGGGTCGCCG CTAGGCGGGC TCGACCTCGA ATTCGTCCGC
GCGCGCGACG TGCTGTCCGC GCACGAAATC CGGTTTCAGC CGGGCGTGAA CGAGGAGTTG
GCCGCGACGG CCGTATGGGG CACGCAGCAG GTCGATCTGA TCGGCGAGTC GAAGTTCGAC
GGCGTGTTCG CGTTGTGGTA CGGAAAGGGG CCGGGCGTCG ATCGCTCGGT CGACGTGCTC
AAGCACATGA ACTATGCGGG CACGAGCGCA CATGGCGGCG TGCTGCTGGT CGCGGGCGAC
GATCACGGCG CCTATTCGTC GACCCTTCCG CATCAGAGCG ACCATGTGTT CAGCGCCGCG
ATGATTCCTG TACTGTATCC TTGCAACGTC GACGAATACA TCGAGCTCGG GCTGCACGGC
TTTGCGATGT CGCGCTATTC GGGCTGCGCG GTGGGATTCA AGGCGCTCGC CGATACGGTC
GAATCGTCGG CGAGCGTCGA TGCGGATCCT TGCGCGGTTC GGATACGTAC TCCGGAAGAT
CACGTGCTGC CGGAGGGCGG GTTGAACTGC CGGACATCGT CGGCCACGCT CGGGGCACAG
GCGCGTGCGC AGGAGTGGCT CACGCATCAG CACAAGTACT TCGCGGTACT CGCGTATGCA
CGCGCGAACC GTCTGAATCG AGTCGTCGGC ACAGCACCGC GCGCCCGCAT CGGCATCGTG
GCCACCGGCA AGAGCTATCT CGACGTGTGC GAGGCGCTGA AGCTGCTCGG CGTCGACGAT
AGCGGCGGTG CGGACGCGGC GATTCGGCTG TTCAAGGTCG CGATGCCGTG GCCGCTCGAG
CCCGAAGGCG TTCACGAGTT CGCGCAGGGG CTGGACGAAA TCGTCGTCGT CGAGGAGAAG
CGGCCGATTG TCGAGCCGCA GATCCGGACG ATGCTGTACG ACTGGCCCGA AGCGCTGCGG
CCGGCGATAC ACGGAAAAAC GAACGAGTAC GGCACGATCG GCGATTGCGA TCCGGAGTCG
GTCCTATCGT CCGTCGGCGA TTTTTCAGTG ATCCGCATCG CGCGCGTGAT CGCCGGACGA
CTCGAGCGAC TGTTCGGCAC GCAAGCGTTC CGCTCGCGGC TTCAAGCGTT CGAGCAATCG
CTCGACGTCG TGCAGCGTGC GCGCTCAATA CCGGCGCGGT CCGCGTACTA CTGTTCGGGC
TGCCCGCACA GCACGTCGAC GCGCGTGCCG CCCGGCAGCG TCGCGCTTGC CGGCATCGGT
TGCCACGTGA TGGCGACGTC CATTTATCCG GAACACAACC GAACGTTCAC GCAGATGGGC
GGCGAAGGCG CCACGTGGAT CGGTCAGGCG CCGTTCTCGA ACCGACCGCA CGTATTCGCG
AATCTTGGCG ACGGCACCTA TTTCCATTCC GGCTATCTCG CGATTCGCGC GGCGGTCGCG
GCCGGCACCC GCATCACGTA CAAGATCCTG TACAACGATG CCGTCGCGAT GACAGGCGGT
CAGTCCGTCG ACGGGACGAT CACGGTGCAT GCCATGGCGC GCCAGCTGGC CGCGGAAGGC
GTGCGGAAGA TCGCCGTGGT GACGGACGAC GTCGCGCGCT ACGCGAACAG GGACGGACTT
GCCGATCACG TGACGATCCA TCCGCGCGAT GCGTTTGACG ACGTGCAACG CGCGCTGCGC
GAAGTCGACG GTGTGTCGGT GCTCATCTAC GACCAGGTCT GCGCGGCGGA GAAGCGCCGG
CGCGTCGTGC GCGGGACGCT GCCCGCGACG AGACGCCGTG CGTTCGTCAA TGCGCACGTG
TGCGAGGACT GCGGCGACTG CGGAAAAGTG TCGAACTGTT CGGCGATCGT GCCGGTCCAC
ACGCCGCTCG GGCGCAAGCG GACGATCAAC CAGACGTCGT GCAACCACGA TTTCTCGTGC
ACTGACGGCT TTTGCCCGAG CTTCGTCACG GTCGTCGGCG GGGCGCTACG CAAGCGCACG
GCGCGCCCCG ACAGCGCGCC GGACAGCATC GAACCTGCGC TGCCGACGCC CGCGCTGCCC
GCCGTGTCGG CGCGCCCGTT CAACATACTG GTATGCGGAA TCGGCGGCAC CGGCGTTATT
ACGATCGGTG CGCTGCTCGG CCGCGCAGCG CATCTTGAGG GCAAGGGCGT GTCGGTGCTC
GACATGACCG GCATGTCGCA GAAGAACGGC GCCGTGACGT GTCACGTCCG TATCTTCGAC
GCGCCGGGCG ATACGTGGGC GCAACGCATC CCGTCCGCGC ATGCCGATCT ACTGCTCGGC
TGCGACATGC TGACAGCGGC AGCGCCGGAC GCCGTCGAAC GCGTGGGCCG GGACAGAACG
GTCGTGACGT TGAACGGTCA CGAGCAGCAG CCCGGCTACG CCGCACAACT GAGCGACTGG
CAATTTCCGC GGGACGAAGT CGAGCAATTA CTGGCCGACG CGGCGGGGCG CGAGGTCGAC
GTAATAGACG CGAACCGGCT TGCGACGCAG CATTTCGGCG ACGAGATGCT CGCCAATATC
GTAATGCTCG GCTATGCGTG GCAGCGCGGC CGGGTACCGT TGTCCGAAGC GTCGCTGCTA
CGTGCGATCG AGCTCAACGG TGTCGCAGTC GAGAAGAATC GAGCGGCATT TGCGCTCGGA
AGGCGCGCTG CGGCCGCAGA GACGGGCGAT CGCCAGCCCC GGCAGCAGGC GATCGTGTGG
GCGCGTCCGC AATCGCTCGA CGCGTCGATC TCCCGGCACG GTGCGTTTCT CGCCGCATAT
CAGCATTCGC GTTATGCGGC GCGCTATCGG GATTTCGTCG AGCGCGTTCG GGCGGCGGAG
CGCGCGGCGT GTGCCAAGGA CGCAATTGCG CGGGCCGTCG CGGAGAATCT GTTCCGGCTG
ATGGCGTACA AGGACGAATA CGAAGTGGCG CGCCTGTATG TCGACCCCGA GTTCGGTCGC
ACGCTCGACG AAACGTTCGA AGGCGCGTAC ACGCTGCGCT TCCACTTTGC ACCGCCGATG
TTGCCGCTCC GGCGCCGCGG TGCGATTGCG ACGAAGCGCA CGTTCGGGCC ATGGTTCATC
GTCGTGCTTC GTATGCTTGC TGCATGCCGG GCGGTGCGCG GCACATGGCT CGATCCGTTC
GGCCATACCG CCGAGCGCAA GTCGGAGCGC CGGCTGATCG ACGAGTACAT GGCCGGAATC
GATCAGGCGC TGGCAACGCT CGACAGCGAG CGTTACGACA CCGTGCTCGA GCTCGCGCGA
CTACCCGAGC AGATTCGCGG ATATGGCCAC GTGAAAGCCG CCCGTATGCG GCAGGCATCG
CAAACGTGGA ACGGCCTGCT CGCGCGGTTG ACCGGCCGTG AAGTCGCGCG GGACGGCGTA
CCGACGGCGA CGGACGACCC GCATTTCGAC CCACTCGCCG TCGCGTTCCC GCAGCGGAGT
CAGTCGTGA
|
|---|
| Protein sequence | MSDGRFTATA GRVYLSGVQA LVRLTVMQRM RDAAAGLSTA GFVSGYRGSP LGGLDLEFVR
ARDVLSAHEI RFQPGVNEEL AATAVWGTQQ VDLIGESKFD GVFALWYGKG PGVDRSVDVL
KHMNYAGTSA HGGVLLVAGD DHGAYSSTLP HQSDHVFSAA MIPVLYPCNV DEYIELGLHG
FAMSRYSGCA VGFKALADTV ESSASVDADP CAVRIRTPED HVLPEGGLNC RTSSATLGAQ
ARAQEWLTHQ HKYFAVLAYA RANRLNRVVG TAPRARIGIV ATGKSYLDVC EALKLLGVDD
SGGADAAIRL FKVAMPWPLE PEGVHEFAQG LDEIVVVEEK RPIVEPQIRT MLYDWPEALR
PAIHGKTNEY GTIGDCDPES VLSSVGDFSV IRIARVIAGR LERLFGTQAF RSRLQAFEQS
LDVVQRARSI PARSAYYCSG CPHSTSTRVP PGSVALAGIG CHVMATSIYP EHNRTFTQMG
GEGATWIGQA PFSNRPHVFA NLGDGTYFHS GYLAIRAAVA AGTRITYKIL YNDAVAMTGG
QSVDGTITVH AMARQLAAEG VRKIAVVTDD VARYANRDGL ADHVTIHPRD AFDDVQRALR
EVDGVSVLIY DQVCAAEKRR RVVRGTLPAT RRRAFVNAHV CEDCGDCGKV SNCSAIVPVH
TPLGRKRTIN QTSCNHDFSC TDGFCPSFVT VVGGALRKRT ARPDSAPDSI EPALPTPALP
AVSARPFNIL VCGIGGTGVI TIGALLGRAA HLEGKGVSVL DMTGMSQKNG AVTCHVRIFD
APGDTWAQRI PSAHADLLLG CDMLTAAAPD AVERVGRDRT VVTLNGHEQQ PGYAAQLSDW
QFPRDEVEQL LADAAGREVD VIDANRLATQ HFGDEMLANI VMLGYAWQRG RVPLSEASLL
RAIELNGVAV EKNRAAFALG RRAAAAETGD RQPRQQAIVW ARPQSLDASI SRHGAFLAAY
QHSRYAARYR DFVERVRAAE RAACAKDAIA RAVAENLFRL MAYKDEYEVA RLYVDPEFGR
TLDETFEGAY TLRFHFAPPM LPLRRRGAIA TKRTFGPWFI VVLRMLAACR AVRGTWLDPF
GHTAERKSER RLIDEYMAGI DQALATLDSE RYDTVLELAR LPEQIRGYGH VKAARMRQAS
QTWNGLLARL TGREVARDGV PTATDDPHFD PLAVAFPQRS QS
|
|---|
| |