| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5663 |
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| Symbol | |
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| ID | 6182118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 168509 |
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| End bp | 170242 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641688795 |
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| Product | type IVB pilus formation outer membrane protein |
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| Protein accession | YP_001815659 |
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| Protein GI | 172064947 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0603962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0114433 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTCC TCCGTCGTCC TTTCGTCGTC CTTGCCGCAT GCCTCTCGTT GCTCGCGGGG
TGCACCGGTC TCCTGGACAA GATCGAGCGC AACTCGCAAT CCGATACCGC GCGTGCGGGG
CAATTGCTCG GCAAGCTCTC GAACGGCGAC AACCGCGCGG TGCCGGGCAG TGACGACGTC
ATCGTCAAGG ACGAACTCTG GCTTTCGGGC AAGACGATCA AGATCGCGAC GAAATCGACG
CTGCCGAAGC TCTTCGACGA GCCGGCGAGC TTCGACGGCA CGGTCGATTC GCTGCGCATG
TTCGCCGATC GCATTTCGCG CCTCGCGCAC CTGCCGGCCA AGGTTGCGCC GGGCACGAGC
GAAGCGGCCG CGCGCGCGAC GCAGACCGCG GTCGATACGG GGGGCGCCGG AGCCTATCCC
GGCGTGCCGC CGCTGCCCGC CGGCCTGCTG CAGGGGCCCG CGCCGAGCAC GAGCGCGGCG
ACGGTGGCCG CGCGCGTGCC GAGCGTATCC TCGCCCGTGC GCATCGCGTA TTCGCGCGGC
CCGCTGCGCG GGCTGCTCGA CACGGCGTCG GCTCGCTTCG GCGTCTATTG GAAGTACGAG
GACGGCGCGA TCGTCTTCTT CTACACGGCC ACGCGCGTCT ATCAGGTCGT TGCCATTCCG
GGCGACTCGA AGCTGGATAC GAACGTCGTG AGCGGTGCGA GCAACAGCGG CGGCGCCTCG
AGCAACAGCG CGGGGGCCGC GGGCGGATCG GGCGCCGGTG GCGCGGGCAT CGGCGGCGGA
GGCGGCGGGA CGTCCGGTTC GCCCTCCGTG TCGTCGGACA ACACCGCGAA TATCACGATG
AACGCGCAGC TCTCTGTGTA CAACGGCTTG CAGACGGCGA TCAAGGCGAT GCTCTCTCCG
GCAGGCTCGG TCATCACCTC GCCAGCCACG GGCTCGATCG CGGTCACCGA TACGCCCGAT
GTGCTCGAGC GCGTGGGCGA GTTCATGGAT CAGCAAAACC GCGTGCTCGC GCGGCAGGTG
CTCATCAACG TGACGGTGCT CTCGGTCACG CTTTCCGCGG CGGACAGCTA CGGCATCAAC
TGGCACGCGG TCTATCAGGC GCTCGGCACG CAGTTCGGCA TCACCACCGC GTTCACGAGC
ATGATCCAGA ACCCGAGCGA GCTCTCGGCC TCGGTCATCA CACCGTCGAG CCGCGCGTCG
AGCACGACGG CCGTCATCGA TGCGCTGTCG ACGCAGGGCA CGGTGCACCG CAAGACCTCG
GCCTCGATCA CGACGCTCAA CGATCAGCCC GTTCCCGTGC AGGTGGCCGA GCAGCAAGGC
TATCTCGCGC AGATCTCGAC GACCAACACC GTCAACATCG GCAGCCAGAC GTCGCTCACG
CCGGGCACGA TCACGACCGG CTTCAACCTC ACGGTGCTGC CGCACATCCT CGACGACGGC
ACGATCATGA TGCAGTTCTA CAGCAACATT TCGTCGCTCG TGAACCTTGC GCCGTTCGGC
CCGGCGAACC AGCAGATCCA GCTGCCGACC GTCGATACGC GCAACTTCCT GCAGCGCATC
GCCGTGAAGT CGGGGCAGAC GCTCGTCATC AGCGGCTACG AGGGCATCAC CGATCAGGAT
AACCGGCAAG GCGTCGGCCA TCCGTCGAAC TACGCGATGG GCGGGTTCAA CGCCTCCGGC
ACGCGCGAGG TGATCGTCAT CCTGCTCTCG CCGATCGCGA TCAACGGCGC TTGA
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| Protein sequence | MSVLRRPFVV LAACLSLLAG CTGLLDKIER NSQSDTARAG QLLGKLSNGD NRAVPGSDDV
IVKDELWLSG KTIKIATKST LPKLFDEPAS FDGTVDSLRM FADRISRLAH LPAKVAPGTS
EAAARATQTA VDTGGAGAYP GVPPLPAGLL QGPAPSTSAA TVAARVPSVS SPVRIAYSRG
PLRGLLDTAS ARFGVYWKYE DGAIVFFYTA TRVYQVVAIP GDSKLDTNVV SGASNSGGAS
SNSAGAAGGS GAGGAGIGGG GGGTSGSPSV SSDNTANITM NAQLSVYNGL QTAIKAMLSP
AGSVITSPAT GSIAVTDTPD VLERVGEFMD QQNRVLARQV LINVTVLSVT LSAADSYGIN
WHAVYQALGT QFGITTAFTS MIQNPSELSA SVITPSSRAS STTAVIDALS TQGTVHRKTS
ASITTLNDQP VPVQVAEQQG YLAQISTTNT VNIGSQTSLT PGTITTGFNL TVLPHILDDG
TIMMQFYSNI SSLVNLAPFG PANQQIQLPT VDTRNFLQRI AVKSGQTLVI SGYEGITDQD
NRQGVGHPSN YAMGGFNASG TREVIVILLS PIAINGA
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