| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5660 |
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| Symbol | |
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| ID | 6182115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 164798 |
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| End bp | 166582 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641688792 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001815656 |
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| Protein GI | 172064944 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.472724 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0115974 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCGT CTCCGACACC TCCGGGCAAG ACGCCCACAA GCGTGACGCC ACTGATTCTC
TCGCGCGCCG TGAAGCCGGT CGAAACCGAT CCGTCTGTTA CGCAGGGTCA GCCGGCGGCC
CCGGCCGGGC CGGCTCTCGC GCCCGTTGCG CGGCCGCGCG AGCCGGTGCT GAGCGCCGTG
GCCGCTGCCG CCGCCGCTTC GGTGCAGCCC GCGCAAACAG CGTCGCAAAG CCAGCCGCCG
GGGCAGGTGC TGCCGCTCGC CGCAGTGGCG CGCCCGCTTT CCGACAGCGG CGAGTTCGCC
GCGAGCGACG AGGAGCGCAA GTTTCTCTGT CTGCTCGACG ACGGTACGCT GCTCGTTGCC
GAAGGGCACG AAATGAATCC GTTCGTGCTG TCGTACTGCG CGAGGCTCGA ACGGCTCAAT
TGCCACTACA CGACGCGGCT CGTGACACTC GATGCGATCC GACGCAGCTA TCAGGGCCCG
CGCCGCGACG GCAGTGCCGA GCGTATCGAT CACACGCGGA TGCAGGTCCT CGCGAAGAAC
CTGATCGCGC GGGCGTGCGA CGAGCGTGCA TCGGATATCC ATATCCGTGT GAACCGCTTC
AGCACGGAGA TTCTTTTTCG CATCCACAAC GAACTCGTGC GCATTTCGGA GCAGACGCGC
GAGTACGGCG AGCGGCTGCT CGCCACGCTT TATGCGGCGA TGTCGAGCGT ATCGGACAAC
ACCTACAAGC CGAACGAACG CCAGGACGCG GCCATCGGCG ATCGCGACAA GCTGCCGGAC
CGGCTTTTCG GCGTGCGGAT CGCGACGGCG CCCACGAGCG TCGGCAGCGT CATGGTGCTG
CGGCTGCTCT ACAACGATGC GGGCGAGGCG ACGGCCCTGA CCGAGCTCGG CTTCACGGTG
GCGCAGGCGA ACGCGTTCGA GCTGCTCGCG CAGCAGCCGC ACGGCATGAA CATCATCAGC
GGGCCGACCG GCTCGGGCAA ATCCACGACG TTGCAGCGCG TGCTGACGAA GCAACTGCGC
GAGATGGCCG GCTCGATCCA CGTCATCACC GTGGAAGACC CGGTGGAGTA CCCGATCGAG
GGCGCCGTGC AGACGCCCGT CGTCAACGCG CCGACGGAAG AGGCGCGCTC GCTCGCGTTC
GCCGCCGCGA TCGCGAATGC GATGCGGCTC GATCCCGATA CGATCATGAT CGGCGAGGTG
CGTGACCGCG CATCGGCGCA AAGCGCGTTG CGCGCCGCGA TGACGGGCCA TCAGGTCTGG
ACGACGGTGC ACGCGAACGG CGCGCTCGCG ATCGTGGACC GCCTCGTCGA TCTCGGCTTG
CCGATCGCGA TGGTGACGGA CGAATCGCTC GTCACGGGGC TCATCAGCCA GCGGCTCGCC
AAGCTGCTGT GTCCGCACTG CTCGCGCCCG CTGGCCGAGG CGATGGCGCA GCTCGACATG
GGGCTCGTCG CGCGCGTGAA GCGGGCCGTC GGCGCGCGGT TCGACGCGGT GCGCGTGGCG
GGGCCCGGTT GCCCGAATTG CAAGAACGGC ACGGTCGGCC GGACCGTGGT GGCCGAGGTC
GTGCGTACCG ACGCGACGTT TTGCGAATTG CTGCGCGCCG GGCGCAAGCC CGATGCACAG
GCGTACTGGC TCAGCGAGCT CGCGGGGCAG ACGGTCGCGC AGCACGCGCT CGAAAAAGTG
GCGGCGGGCC TCATCGATCC GCGCATGGCG GAGCGCGTGG TCGGCCCGTT CATGCCGGGC
AGCGGGGGGC GGCCGCAGCC GCTCGGAAGC GGCTATGGCA CTTGA
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| Protein sequence | MSSSPTPPGK TPTSVTPLIL SRAVKPVETD PSVTQGQPAA PAGPALAPVA RPREPVLSAV
AAAAAASVQP AQTASQSQPP GQVLPLAAVA RPLSDSGEFA ASDEERKFLC LLDDGTLLVA
EGHEMNPFVL SYCARLERLN CHYTTRLVTL DAIRRSYQGP RRDGSAERID HTRMQVLAKN
LIARACDERA SDIHIRVNRF STEILFRIHN ELVRISEQTR EYGERLLATL YAAMSSVSDN
TYKPNERQDA AIGDRDKLPD RLFGVRIATA PTSVGSVMVL RLLYNDAGEA TALTELGFTV
AQANAFELLA QQPHGMNIIS GPTGSGKSTT LQRVLTKQLR EMAGSIHVIT VEDPVEYPIE
GAVQTPVVNA PTEEARSLAF AAAIANAMRL DPDTIMIGEV RDRASAQSAL RAAMTGHQVW
TTVHANGALA IVDRLVDLGL PIAMVTDESL VTGLISQRLA KLLCPHCSRP LAEAMAQLDM
GLVARVKRAV GARFDAVRVA GPGCPNCKNG TVGRTVVAEV VRTDATFCEL LRAGRKPDAQ
AYWLSELAGQ TVAQHALEKV AAGLIDPRMA ERVVGPFMPG SGGRPQPLGS GYGT
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