| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5655 |
|---|
| Symbol | |
|---|
| ID | 6182110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 159634 |
|---|
| End bp | 160734 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641688787 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001815651 |
|---|
| Protein GI | 172064939 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0094034 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTTC CGAGTCACGA ACGTCGCGAC CTGACGCGCG AGATTCTCGA ATTGATCGAC
CTGCGGCAGA CTTTCACCGA CATCCATATC GAGCAGGACC GGCCGATCAT GATCAAGGCG
CCGCGCGGCT GGCTCGCCGT CGGCGAGGAG CCCGTGCTCC ACGACGAAAT GCTGCCCACG
CTGGCCTCGA TCGAACCGGA CTGGGAGGCG CTGCTTCAGC ACGGCGCGAT CGATCGCCCG
TTCGTGCTCA CGCGCTGCCG CCTTCGCTGC AACATCTACC GCACCAATGG CGGCCGCAAG
CTCGTCATCT CGATCCGCCG CCTGCCGCTG CAGCCGCTCG CGCTCGACAA GCTCGGCCTG
CCCGCCTACG TGCGCTCGAT GATCGACAGC GCCAAGGGGC TGATCCTCGT GACGGGCCCG
ACCGGCTCGG GAAAGACGAC GACCATCGCC TCGCTGCTCG AGCACATCAA CCGCACGCGC
AACAGCCACA TCGTCACGAT CGAAGAGCCG ATCGAATACG AACTCGAGGG CCGCACGTCT
ATCGTCTCGC AGCGGCAAGT GCCCACCGAC ACGCCGAGCT TCTCGGCCGG CCTGCGCGAG
GCGCTGCGGC AAAAACCCGA CGTCATCATG GTGGGCGAGG TGCGCGACCC CGAGACGGCG
GAGACGGCGC TGCAGGCCGG CGAATCCGGC CACCTCGTGC TCGCGACGAT GCACACGGGC
AGCGCGATCG GCACGCTCAC GCGGCTGCTG TCGTTTTTTC CGGCCGAGCA GCGCGAGCGC
TATGCGGCCG CGCTCGCGAA CTGCCTCATC GGCGTGATCT GCCAATGCCT CGTGCCGACG
GAGGATGGCG AGAACTTCGT GCTCGCGAGC GAACTGCTCT TCAACAATAA TCAGCAGATC
AGCGGCCTGC TGACCGATCC GGGCAAGCTG CCGTACCTTG CCGAGTTCAT GAAGCGCAAG
GAAGACAACA TGTCGCGCAT GCTCAACGAT CACCTCTTCA GCCTCGTATC GAAGCAGCAA
TGCCTGCCGC GCGACGTGCT GCGCGCGACC TACAACCGGC TCGAGCTGCA CGAAATGCTG
CAGACGCTCG CGCCGCACTG A
|
|---|
| Protein sequence | MNVPSHERRD LTREILELID LRQTFTDIHI EQDRPIMIKA PRGWLAVGEE PVLHDEMLPT
LASIEPDWEA LLQHGAIDRP FVLTRCRLRC NIYRTNGGRK LVISIRRLPL QPLALDKLGL
PAYVRSMIDS AKGLILVTGP TGSGKTTTIA SLLEHINRTR NSHIVTIEEP IEYELEGRTS
IVSQRQVPTD TPSFSAGLRE ALRQKPDVIM VGEVRDPETA ETALQAGESG HLVLATMHTG
SAIGTLTRLL SFFPAEQRER YAAALANCLI GVICQCLVPT EDGENFVLAS ELLFNNNQQI
SGLLTDPGKL PYLAEFMKRK EDNMSRMLND HLFSLVSKQQ CLPRDVLRAT YNRLELHEML
QTLAPH
|
|---|
| |