| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5654 |
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| Symbol | |
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| ID | 6182109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 157755 |
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| End bp | 159524 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641688786 |
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| Product | YscC/HrcC family type III secretion outer membrane protein |
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| Protein accession | YP_001815650 |
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| Protein GI | 172064938 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.741778 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0207457 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTGGG CTCGCCGACT GGGCACCGTG GCCCTCGCCG CCGCGCTCGC ATTCGGGGCG
ACGGCCCCCG TCGCCGAGGC GGCGGCCGTG CGCTGGAAGG CGTCGATCGT CGATTACGAA
GCGCAGGGCA AGGACATCAA GGATGTGCTG CGCGACTTCG GCGCGAGCCA GGGCATCCCC
ACGCGCATCG CCGCCGATGT GAGCGGCACC GTGAGCGGCA AGTTCCATCT GCCGCCGCGG
CGCTTTCTCG ATACGCTCGC GTCGTCGTTC GGCTTCGTGT GGTACTACGA CGGCGAAGTG
CTCGACATCA CGACGGCCGC CGAACTGCAG AGCACGCTCG TGAAGCTCGA TTCGGCCGAT
ACGGGCGCGC TGCGCGATGC GCTCGACCGC CTGCGCATCT CCGACGAGCG CTTTCCGATC
GTCTACGACA GCGCGCAGGG CACGGCGCTC GTGAGCGGGC CGCCTCGCTA CGTGCAGATG
GTGACGAACG TGGCCTCGCG GCTCGACAAC AACGCGGCGC ATCGAAGCGG CACGCAGGTA
CGCGTCTTTC CGCTCTTTCA CGCGTGGGCG CACGACCGCA CGGTGCCCAT CGACGGCCGG
CAGGTCACGC TGCAGGGCGT GGTGGCCGTG CTCAACGGCA TCTACCACCC GCACATGGCC
AAGGCCGCCG ACAAGCGCGG CGAGGGCGAG GGCGGCCGCG CGGCGGGCGG CGTGAAGCGC
AACACGCCGA TCAACGACGT GAACGGCAAT GCCTACAACG GCCCGTACAT TCCGCCGCCG
GTGCCGTCGG GCGCGGCCGG CAAGGGCATG TTCGCCGGGC TCACCGGGCA GCCTTCGCCG
GCCGTGGCGG CGGCGGTGGG CGAGCCGCCG CCGCCGCAGA ACACGAGCAC GGCGCCGGCG
AGCGACGATC AACTGCCCGT CATCGTCGCG GACCAGCGCA CGAACTCCGT CGTGATTCGC
GATACGGCCG ACCGCATGGA TCAGTACGGC AAACTGATCG ATCGCCTCGA CGTCAAACCG
CAACTGATCG AGATCGAGGC GCACATCATC GAGATCGACG ACGACGCGCT GCGTCAGCTC
GGCGTCGACT GGACCGCGCA CAACAGCCAC ATCGACGTGC AGACCGGTAC CGGCACGCTC
GGACAGAACA CCTACAACGG CACGCTCTCG CAGAACTTCG GCCAGACGGC GCTGGCGGGC
AACGTGCTCG CGGCGGCAAC GCCCGTGGGC GCATCGGTGG CCGCCGTGCT CGGCGACGCC
GGCCGCTATC TGATGGCACG CATCTCGGCG CTGCAGGAGA CGAAGGCCGC CAAGATCGAC
GCGAGCCCGA AGGTCGTCAC GCTCAACAAC ATCGAGGCCG TGATGGACAA CCAGACGCAG
TTTTTCGTGC CGGTGTCGGG ATACACGTCG GGCGATCTCT ACAGCGTGTC GACGGGCATC
TCGCTGCGTG TGCTGCCGAT GGTCGTGGAG GAGGACGGGC GCACGCGTAT CAAGCTCGAC
GTGGCGATTC AGGACGGCCA GCTCACCGAT CGTACGGTCA GCAACCTGCC GGTGATCCAG
AACAGCACGA TCAACACGCA GGCGTTCATC GAGGAGGGGC AGGCGCTGCT CATCGCCGGC
TACCGCGCCG ACACCGCGAC GATGGGCGTG ACCGGGGTGC CCGGGCTCTC GAAGATTCCG
TTGATCGGCG CGCTCTTCAG GACCGACAGC CGCCAGAAGA GCCACATGGA GCGGCTCTTC
CTGCTGTCGC CGCGCGTCAT CTCGCCGTGA
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| Protein sequence | MNWARRLGTV ALAAALAFGA TAPVAEAAAV RWKASIVDYE AQGKDIKDVL RDFGASQGIP
TRIAADVSGT VSGKFHLPPR RFLDTLASSF GFVWYYDGEV LDITTAAELQ STLVKLDSAD
TGALRDALDR LRISDERFPI VYDSAQGTAL VSGPPRYVQM VTNVASRLDN NAAHRSGTQV
RVFPLFHAWA HDRTVPIDGR QVTLQGVVAV LNGIYHPHMA KAADKRGEGE GGRAAGGVKR
NTPINDVNGN AYNGPYIPPP VPSGAAGKGM FAGLTGQPSP AVAAAVGEPP PPQNTSTAPA
SDDQLPVIVA DQRTNSVVIR DTADRMDQYG KLIDRLDVKP QLIEIEAHII EIDDDALRQL
GVDWTAHNSH IDVQTGTGTL GQNTYNGTLS QNFGQTALAG NVLAAATPVG ASVAAVLGDA
GRYLMARISA LQETKAAKID ASPKVVTLNN IEAVMDNQTQ FFVPVSGYTS GDLYSVSTGI
SLRVLPMVVE EDGRTRIKLD VAIQDGQLTD RTVSNLPVIQ NSTINTQAFI EEGQALLIAG
YRADTATMGV TGVPGLSKIP LIGALFRTDS RQKSHMERLF LLSPRVISP
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