| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5645 |
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| Symbol | |
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| ID | 6182460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 150154 |
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| End bp | 150417 |
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| Gene Length | 264 bp |
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| Protein Length | 87 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641688777 |
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| Product | HrpO family type III secretion protein |
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| Protein accession | YP_001815641 |
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| Protein GI | 172064929 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4794] Type III secretory pathway, component EscS |
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| TIGRFAM ID | [TIGR01403] type III secretion protein, HrpO family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0584455 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACCG ATACGCTCGT TCGCATCACC TCGCAGGGCC TGCTGCTCTG CCTGTCCGTC
TCGATGCCGG TGGTGGCCGT CGCCGCGCTC TCCGGCCTCG CGATTTCGTT CGTGCAGGCC
ATCACGTCGA TGCAGGACCA AAGCATCTCG TACGCGGTGA AGCTCGTGGC CGTCGTGGCC
ACCGTGCTCA TGACCGGCGC CTGGGGCGCC GCCGCGATCC TGCGCTTCGC CAATCAGATC
GTCACGCTCG CGGTGCCGTC ATGA
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| Protein sequence | METDTLVRIT SQGLLLCLSV SMPVVAVAAL SGLAISFVQA ITSMQDQSIS YAVKLVAVVA
TVLMTGAWGA AAILRFANQI VTLAVPS
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