| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5641 |
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| Symbol | |
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| ID | 6182456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 145422 |
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| End bp | 147398 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641688773 |
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| Product | HrcV family type III secretion protein |
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| Protein accession | YP_001815637 |
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| Protein GI | 172064925 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.335669 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.15562 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAGA CCATCAAGCT GCCCGGCATC GGCGAGGCCG GCATCGCCAT CCTGCTGATC
GCGATCGTCT CGCTGATGAT CCTGCCGCTG CCGCCCGCCA TCATCGATGG TTTGCTCGCC
ATCAACATCG CGATCAGCAT CACGCTGCTC ATGGTGACGA TGTACGTCGG CCATATCGCG
ACGCTGTCGG CGTTCCCGTC GGTACTGCTT TTCACGACGC TTTACCGGCT CTCGCTGAAC
ATCGCGTCGA CGAAGTCGAT CCTGCTGCAT GCCGATGCCG GCGAAATCAT CGAGAGCTTC
GGGCAGCTCG TCGTGGGCGG CAATCTCGTC GTCGGCCTCG TCGTGTTCGT CATCATTTCG
GTCGTGCAGT TCATCGTCAT CGCCAAAGGC TCGGAACGCG TCGCCGAAGT GGGGGCGCGC
TTCACGCTCG ATGCGCTGCC CGGCAAGCAG ATGAGCATCG ACGCTGATCT GCGCGCGAAC
ATCCTGACAC CGGAGGAGGC GCGCAGCAAA CGCGCGCGGC TCGCTATCGA AAGCCAGCTG
CACGGCGGCA TGGACGGTGC GATGAAGTTC GTGAAAGGCG ATGCGATCGC CGGCCTCATG
ATCACCATGA TCAACATCGT CGCGGGCATT GCCGTGGGCG TCGCGTATCA CGGCATGTCC
GCCGGCGAGG CGGCCAACCG CTTCTCGGTC CTCTCGATCG GCGACGCCAT GGTCTCGCAG
ATTCCGTCGC TGCTGATCTC GGTGGCCGCG GGCGTCATGA TCACGCGCGT GGACGAAGGC
GGCGAGCACG GAAACGCCTC GCTCGGCGAG GACATCCGGC GCCAGTTTAC GAGCAGCTCG
CGCGCGCTCT ACTTCGCGTC GCTGCTGCTG CTCGGTTTCG CGGCCGTACC CGGCTTTCCA
GCGGCGCTCT TCGCGTTGCT CGCCGGGCTG CTCGGCTTCG TCGGCTACCG GCTGCAGAAA
AAGCAGCACG GCTCCGCCAA AGGCGGCGGC AAGCCCGTCG TCGCTCTGCA GCGTGCCGGC
GCCCGGGGCG ACGCGCCCTC GATCCTGCCG CGCCCGCCGC AGTTCACCTG CCCGCTCGGC
GTGCGGCTCG CGCCCGACGT CAGCGCCCGG CTCGCGGCCG ACGCGCTCGA CCGCGCGTTC
GATGTGCAGC GCCATGCGCT GCAGTCGGAA GTCGGCCTGC CGTTCCCGGG CATCATGATG
TGGACCGACG GCAAGCTGCC CGAGGACAGT TACGAAGTGC TCATCTTCGA CGTGCCCCAA
GGGCGGTCCA CACTCGCCGA AACACGCGCC GTACACGCAG CGGCCCACAC GGGCGACGCG
AAGCCCGATG CGGCTGCGGC CACGCCCGAG GGATTGATCG CTCGCCACAC GATCGACCTG
CTGCGGCGCA ATGCCCATCT CTTTCTCGGC ATACAGGAAG CGCAGTGGAT GCTCGATCAG
CTCAACGAGG ACTACCCGGG CCTCGTCGCC GAGGTGCAAA AGGCGCTGCC GCTGCAGAAG
ATGGCGGACG TGCTGCGCCG GCTGCTGGAG GAGGACGTGC CCGTGCGCAA CATCCGCAGC
ATTACCGAAA GCCTGATCGT CTGGGGGCCG AAGGAGAAGG ACATGCTGAT GTTGACCGAA
TACATCCGCA TGGAGCTCGG CCGGCTCATC GCCTATCGCG CGACGGGCGG CCCACGGGAT
CTGCCCGTCC TGCTCGTGGA CGTTCAGTTG GAGCAGCACA TCCGGCAGTC GATCAAGCAG
ACGCCCACGG GCAACTTCCT CGCGCTGCCG CCCGACGAGA TCGCCGGACT CGTCGGCAAA
ATCGCGGAGA TCGTCGGCGA CACGCCACGC CAGCCACTCG CGCTCGTCGC CTCGATGGAT
ATCCGGCGCT ACATCAAGCG CATGATCGAG GCGCGGCTGC CCTGGCTGCC CGTCTACTCG
TACCAGGAGC TCGGCGCTCA CGTCGATCTC CAGCCCGTCG GCCGCCTGGC GATGTGA
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| Protein sequence | MLKTIKLPGI GEAGIAILLI AIVSLMILPL PPAIIDGLLA INIAISITLL MVTMYVGHIA
TLSAFPSVLL FTTLYRLSLN IASTKSILLH ADAGEIIESF GQLVVGGNLV VGLVVFVIIS
VVQFIVIAKG SERVAEVGAR FTLDALPGKQ MSIDADLRAN ILTPEEARSK RARLAIESQL
HGGMDGAMKF VKGDAIAGLM ITMINIVAGI AVGVAYHGMS AGEAANRFSV LSIGDAMVSQ
IPSLLISVAA GVMITRVDEG GEHGNASLGE DIRRQFTSSS RALYFASLLL LGFAAVPGFP
AALFALLAGL LGFVGYRLQK KQHGSAKGGG KPVVALQRAG ARGDAPSILP RPPQFTCPLG
VRLAPDVSAR LAADALDRAF DVQRHALQSE VGLPFPGIMM WTDGKLPEDS YEVLIFDVPQ
GRSTLAETRA VHAAAHTGDA KPDAAAATPE GLIARHTIDL LRRNAHLFLG IQEAQWMLDQ
LNEDYPGLVA EVQKALPLQK MADVLRRLLE EDVPVRNIRS ITESLIVWGP KEKDMLMLTE
YIRMELGRLI AYRATGGPRD LPVLLVDVQL EQHIRQSIKQ TPTGNFLALP PDEIAGLVGK
IAEIVGDTPR QPLALVASMD IRRYIKRMIE ARLPWLPVYS YQELGAHVDL QPVGRLAM
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