| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5640 |
|---|
| Symbol | |
|---|
| ID | 6182455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 144358 |
|---|
| End bp | 145416 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641688772 |
|---|
| Product | type III secretion system protein HrcU |
|---|
| Protein accession | YP_001815636 |
|---|
| Protein GI | 172064924 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
|---|
| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.122414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG AGAAAACCGA AGAGCCCACA GACAAGAAGC TGGACAAAGT CCGCGAGGAA
GGTCAGGTCG CGAAGAGTTC CGACCTCGTC GAAGTCGCGT CGCTGGGCTC GATCGTGCTC
GTGCTGACGG CGGGCCAGCA CTACCTTGCC GATACACTGC GCGCGGTCGT CAAGGAGGCG
ATCGATTTCA CGCACGGCCC GCGCGAGTTG CAGGACCTCT CGGTCGCGCT CGTTCATATG
GGCCTGCAGG CGCTCGGCCT GCTGTGCGGG ATCGCGGCCG TCGCGCTCGT CGCGGCCTTC
CTCGCGCTTG CCCCGCAAAC GGGGCTCAAG ATCTCGCTGA AAGCCGTCAT GCCGAAGCTC
GCGTCGGTCA GCCCCGGGTC CGGCTTTCAG CGGATCTTCT CGATGAACTC GGCCATCGAT
CTCGTCAAGA TGGTCGTCAA GGCCGCGATT CTCGTCGCCG TCATGTGGCA GACGATCAAA
AGCGCGATGC CCGTCGTCGC GAGCGCGCTC GACCAGTCGG TACCCCAGTT GATCGCCGTG
CTGTGGTCCG TGCTCATGCA TGTCGTCGTG GTCGCGCTCG GCGTGTTCAT CGCCATCGGC
GCATTCGACT ACAAGCTGCA GAAGTGGCTC TTCATCCGCA AGAACCGGAT GTCGAAAGAC
GAGGTGAAGC GCGAGCACAA GGAAAGCGAC GGCAACCCGG AAGTCAAGGG CGAACGCAAG
CGCATGGCCA GGGAAATGTC GCAGGAAGGC CCGAAAGGCG GCGTATCGCG TGCGAACGTC
GTGGTCGTCA ACCCGGTTCA CTACGCCGTC GCGCTGCGCT ACGACCCGAC GGAGTTTCCG
CTGCCCGTCG TGCTCGCCAA GGGCCTCGAC GAGCAGGCGC TGCGGCTGCG CCAGCAGGCG
ATGCACGCGC GCGTGCCCAT CGTCGCGAAC CCGCCCGTCG CGCGGATGCT GCACAAGGTA
CCGCTCAATC AGCCGATTCC CGAAGAACTG TTCGAAGTCG TCGCCGCGAT TCTTCGCTGG
GTGGACGGCC TCGCGCCTCA AACCGCCACC ATGGAGTAG
|
|---|
| Protein sequence | MSDEKTEEPT DKKLDKVREE GQVAKSSDLV EVASLGSIVL VLTAGQHYLA DTLRAVVKEA
IDFTHGPREL QDLSVALVHM GLQALGLLCG IAAVALVAAF LALAPQTGLK ISLKAVMPKL
ASVSPGSGFQ RIFSMNSAID LVKMVVKAAI LVAVMWQTIK SAMPVVASAL DQSVPQLIAV
LWSVLMHVVV VALGVFIAIG AFDYKLQKWL FIRKNRMSKD EVKREHKESD GNPEVKGERK
RMAREMSQEG PKGGVSRANV VVVNPVHYAV ALRYDPTEFP LPVVLAKGLD EQALRLRQQA
MHARVPIVAN PPVARMLHKV PLNQPIPEEL FEVVAAILRW VDGLAPQTAT ME
|
|---|
| |