| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5637 |
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| Symbol | |
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| ID | 6182452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 141781 |
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| End bp | 142575 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641688769 |
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| Product | YscJ/HrcJ family type III secretion apparatus lipoprotein |
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| Protein accession | YP_001815633 |
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| Protein GI | 172064921 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4669] Type III secretory pathway, lipoprotein EscJ |
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| TIGRFAM ID | [TIGR02544] type III secretion apparatus lipoprotein, YscJ/HrcJ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0759041 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCGA ACCTCGTGCC TTCAAGGCCG CGCGCTTCAT GGCGGCTCGT CGCGACGGCT
GTGCTCGTGC TGTCGCTCGC GGCCTGCAAG CAGGAGCTGT ACGGCCAGTT GAGCGAAAGC
GACTGCAACG AGATGGTCGC CGCGCTGCTG AGCTCGGGCG TCGATGCGCA AAAGAGCACG
CCGGACGGCG GCAAGACCTG GTCGGTCAGC GTCGACGAAA AGCAGATCGT GCATGCCGTG
GAAGTGCTGC GCGCACGCGG CATTCCGCGC AAGAAGTTCG ACGACCTCGG CTCGCTCTTC
AAGAAGGACG GGCTGGTATC CACGCCGACC GAGGAGCGCG TGCGCTTCAT CTACGGGCTG
TCGCAGGAGC TCGACGATAC CTTGTCGAAG ATCGACGGCG TGGTCGTGGC GCGCGTGCAG
ATCGTGCTGC CGAACAACGA TCCGCTGGCG CAGTCGGTCA AGCCGTCGTC TGCGTCGGTC
TTCATCAAGT ACCGGCCCGA TGCGAATCTC GAGCGGATGA CCCCCGCGAT CAAGAACCTC
GTCGTGCACA GCATAGAGGG GCTGACCTAC GATCAGGTCA GCGTGACGAG CGTGCCGGCC
GATGCCCCCG ATGCGCCTGC CCGCCCGCGC CGGCAGGGCG GGTGGATCGT TTATGCGGGC
GGCGCGCTCG GCATGCTGTT GTTGATGATC GCCGGCGGCT TTGCGCTCTT GCGCGGCACC
CTGCTCAAGG GCGGCGGCGG CCTGGCGGGC CTGCTCGCGC GCCGGACAGG GCGCGCGGCG
AAAGCGCCGG CATGA
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| Protein sequence | MKSNLVPSRP RASWRLVATA VLVLSLAACK QELYGQLSES DCNEMVAALL SSGVDAQKST
PDGGKTWSVS VDEKQIVHAV EVLRARGIPR KKFDDLGSLF KKDGLVSTPT EERVRFIYGL
SQELDDTLSK IDGVVVARVQ IVLPNNDPLA QSVKPSSASV FIKYRPDANL ERMTPAIKNL
VVHSIEGLTY DQVSVTSVPA DAPDAPARPR RQGGWIVYAG GALGMLLLMI AGGFALLRGT
LLKGGGGLAG LLARRTGRAA KAPA
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