| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5621 |
|---|
| Symbol | |
|---|
| ID | 6182704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 124574 |
|---|
| End bp | 125320 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641688753 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001815617 |
|---|
| Protein GI | 172064905 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.142283 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.488767 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTCG ATTTCGATTT CCTCCTCGGC ACGCTGGGTC AGCTGCTCGC GGCCGTGCCG
ACCACGCTGG GCCTGTTCTT CGCGTCGCTC GTGCTCGGCG GCCTGCTGTC GCTCGTGATC
GTCACGATGC GCGTGTCGCC GCACTGGCTG CCGAACCGCT TCGCGCGCGC CTACATCCTC
GTGTTTCGCG GCTCGCCGCT GCTGATCCAG ATGTTCCTCG TGTACTACGG GCTCGGCCAG
TTCGGCGTGA TCCGCGAAAG CTTCGTCTGG CCGCTGCTGC GCGAGCCGTA TGTATGCGCG
GTGCTGTCGC TCGCGCTGTG CACGGCAGGC TACACGGCCG AGATCCTGCG TGGTGGGCTG
ATGGCCGTGC CGGTCGGGCA GATCGAGGCC GGTTATTCGA TCGGCCTGTC GGGCTTCGCG
CTGCTGCGCC GGGTGATCGG CCCGATCGCA TTGCGCCAGT GCCTGCCCGC GTATTCGACC
GAAGCCGTGC TGCTGGTCAA GTCGACCGCG CTCGCCAGTC TCGTGACCGT TTGGGAGGTG
ACGGGCGTCG CGCAGCAGAT CATCCAGCAG ACCTACCGGA CGACCGAGGT GTTCGTGTGC
GCGGCGCTGA TCTATCTGGG CCTGAACTTC ATCGTCGTGC GCCTGCTCGG CGCGCTCGAA
TGGCGACTCT CCGGCCACCT GCGTGCGCCG AAGCCGTCCG GTGCGCCCGC CGCGGCGGCA
CGCAATCCCC GGCGCGTTGC GTCCTGA
|
|---|
| Protein sequence | MSFDFDFLLG TLGQLLAAVP TTLGLFFASL VLGGLLSLVI VTMRVSPHWL PNRFARAYIL
VFRGSPLLIQ MFLVYYGLGQ FGVIRESFVW PLLREPYVCA VLSLALCTAG YTAEILRGGL
MAVPVGQIEA GYSIGLSGFA LLRRVIGPIA LRQCLPAYST EAVLLVKSTA LASLVTVWEV
TGVAQQIIQQ TYRTTEVFVC AALIYLGLNF IVVRLLGALE WRLSGHLRAP KPSGAPAAAA
RNPRRVAS
|
|---|
| |