Gene BamMC406_5608 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5608 
Symbol 
ID6182691 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp105158 
End bp107038 
Gene Length1881 bp 
Protein Length626 aa 
Translation table11 
GC content69% 
IMG OID641688740 
Productamidohydrolase 3 
Protein accessionYP_001815604 
Protein GI172064892 
COG category[R] General function prediction only 
COG ID[COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0446868 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.586515 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTTAAGG CGACGCAATC CGCGCAATCG GCGGACCTCA TCGTATTCAA CGGCAAGATC 
GCGACGCAGG ACGACAGGCA GTCGTTCGTG ACCGCGCTCG CGGTGAAGGA CGGCCGGATT
CTCGCGGCCG GCAGCGCACC CGAGGTCATG CGCCATGCGC GGAGCGACAC GCTTCACATC
GACCTGAACG GCCGCACCGT GATCCCGGGG CTGAACGACT CGCACCTGCA CGTGATCCGC
GGCGGCCTGA ATTTCAACCT CGAACTGCGC TGGGACGGCG TGTCGACGCT GGCCGAGGCG
CTGCGCATGC TGCGTCGCCA GGTGCTGCGC ACGCCCGCGC CGCAGTGGGT GCGCGTCGTC
GGCGGCTGGA CCGAATTCCA GTTCGCCGAA AAGCGCGGGC CGACGGTGGC CGAACTCAAC
GCGATCGCGC CCGACACACC GGTGTTCGTG ATGCACCTGG GCGACAGCGC GCTGCTGAAC
GCGGCCGCGC TGCGCGCGAT CGGCTATGGC CGCGACACGT GCGATCCGCC CGGCGGCGAG
ATCCAGCGCG ATCGCGCCGG CCGGCCGACC GGCATGCTGC TCGCGCGCCC GGACGTGGCC
GTCCTGCATG CGGCGCTGGA GAAGGGCCCC AGGCTCGGCT TCGACGACCA GATGAATTCG
ATGCGGCACT TCATGCGCGA GCTGAACCGC CTCGGCGTGA CCAGCGCGAT CGACGCCGGC
GGCGATTTTC AGGCCTATCC GGACGATTAC GCCGCGCTCA TGGCGCTCGC GAAGCGCGGC
GAAATGACGG TGCGCATCGC GTACAGCCTG TTCGTGCAGC GTGCGGGGCG CGAAATCGAC
GACTGCGCGC GATGGATGAC GCTGGCGAAG CCCGGCGACG GCGACGCGTT CCTGCGGCTG
AACGGCGTCG GCGAACTGCT GGTGTATTCC GCGGCCGATT TCGGCAATTT CCTCGAACCG
CGCCCGGACC TGCCCGACGA GCTCGAGGCG GAACTGACCG CGGTCGTGCG GCTGCTGGTC
AGCCAGCGCT GGCCGTTCAG GCTGCACGCG ACGTACGACG AATCGATCGG CCGCTTCCTG
AACGTGCTCG AAGCCGTGAA TCGCGACGTC CCGTTCGACG GCCTGCGCTG GTTCTTCGAT
CATTGCGAGA CGATTTCGGA TGCGAACATC GCGCGCATCG CGGCGCTCGG CGGTGGCGTG
ACGGTGCAGC ACCGGATGGC GTTCCAGGGC GAGTACTTCA TTGCGCGCTA CGGCGCGCAA
GCCGCCACGC GCACGCCGCC GATCCGCGCG ATGCTGGCGG CCGGGCTGCC GGTCGGTGCC
GGCTCCGACG CGACGCGCAT CGCGAGCTAC AACCCGTTCG TGTCGCTGTA CTGGATGGTG
TCCGGGCGGA CGGTCGGCGG CACCGTGCTC TATCCGGAGG GCAATCGGCT CAGCCGGATG
GAGGCGCTGC GCCGCTATAC GGTCGGCAGC GCGTGGTTCT CGAACGAAGA CGATCGAAAG
GGCGCGCTGT TGCCCGGCCG GTACGCGGAT TTCGCGGTGC TGACGGACGA CTACTTCACG
ATCGACGAGT CGCACATCAA GCACCTGTCG TCGGTCCTGA CGATCGTCGA CGGCAAGGTC
GTGCACGCGG ACGACGAATT CGCGCCGCTG GCGCCGCCGC CGCTGCCGGT GAGCCCCACG
TGGTCGCCCG TGGCCGAGTT CGGCGGCATG GGCCGGTGGC GCCCGGTCGC GTCGGCGCAG
CCGCGAGCCG CGGCCGACGG CGGCCGCGAT GCCGGTTTCG CGCGCGAATA TGGACGTCGT
TTCGCGCGGC GCCTCGATGC GGCCGCGACG GAACTCGCCG AGCCGTGCAG CGCGTTCGGT
TGCCTCGGCG CTGCTTTTTA G
 
Protein sequence
MLKATQSAQS ADLIVFNGKI ATQDDRQSFV TALAVKDGRI LAAGSAPEVM RHARSDTLHI 
DLNGRTVIPG LNDSHLHVIR GGLNFNLELR WDGVSTLAEA LRMLRRQVLR TPAPQWVRVV
GGWTEFQFAE KRGPTVAELN AIAPDTPVFV MHLGDSALLN AAALRAIGYG RDTCDPPGGE
IQRDRAGRPT GMLLARPDVA VLHAALEKGP RLGFDDQMNS MRHFMRELNR LGVTSAIDAG
GDFQAYPDDY AALMALAKRG EMTVRIAYSL FVQRAGREID DCARWMTLAK PGDGDAFLRL
NGVGELLVYS AADFGNFLEP RPDLPDELEA ELTAVVRLLV SQRWPFRLHA TYDESIGRFL
NVLEAVNRDV PFDGLRWFFD HCETISDANI ARIAALGGGV TVQHRMAFQG EYFIARYGAQ
AATRTPPIRA MLAAGLPVGA GSDATRIASY NPFVSLYWMV SGRTVGGTVL YPEGNRLSRM
EALRRYTVGS AWFSNEDDRK GALLPGRYAD FAVLTDDYFT IDESHIKHLS SVLTIVDGKV
VHADDEFAPL APPPLPVSPT WSPVAEFGGM GRWRPVASAQ PRAAADGGRD AGFAREYGRR
FARRLDAAAT ELAEPCSAFG CLGAAF