Gene BamMC406_5559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5559 
Symbol 
ID6182358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp57412 
End bp58908 
Gene Length1497 bp 
Protein Length498 aa 
Translation table11 
GC content64% 
IMG OID641688691 
Producttranscriptional regulator 
Protein accessionYP_001815555 
Protein GI172064843 
COG category[E] Amino acid transport and metabolism
[K] Transcription 
COG ID[COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAGC AAACATCCAC GCTGACCATC GAGATCGACC GGCAAAATCA GTTGCCGATT 
TATCTGCAGA TTTGTGAGCG CTTCAGAACA GCGATCGCCG CGGGTCATCT GCGTCCCGGC
GATCGCGTAC CCGCGCTGCG TGGTCTCGCG ACACAACTGA GCACGGCGCG CGGCACGGTC
GAACAGGCTT ACACGATCCT GGTCGACGAG GGATATCTGC AAATGCGCGG CGCGGCAGGG
ACATTCGTCT CGCCTTCCCT GCCGAAATCG GTGACGCGGC CGCCGCCCAA GCGCACCGAC
GACTCCGCCT CGTTTCAGGC GTCGGACATG TCGCGCGACA GTCAGCCTCC ACGGCGTCCG
CAGCCAATCG CCGTCGCGAT GAGCGGTGAG CCGCGTCCGT TGCAACCCGG GCTCCCCGCA
TTCGACGCAT TTCCGCGCAA GGTCTGGCAC CGGCTCGTTT CCCAGCGCGC GAGCAGCGGC
GAACGCGCAC TGCTGGGCTA CCCGAATCCG GCCGGTTATC GGCCGCTGCG CGAACACATT
GCAACCTATC TGACGCTGTC GCGCGGCGTC ACCTGCATGC CGGAACAGGT GTTCATCACC
AGCGGTTACC GCGCAACGCT GGAACTCGTA CTGCGCAGCC TCGCGCGCCC GAACGACCGT
GTATGGTTCG AGGATCCCGG TTATCTGCTC GCACGCAGTT TCCTGTCAGA AACCGGAGTG
CAACTCGTCC CGGTGCCGGT GGACACCGAA GGGATCGATG TCGAGCGCGG CATGCAACTG
GACGCGCAGG CACGCTTCGC ACTGGTGACG CCGTCGCATC AGAGCCCACT CGGGCACACG
CTATCCCTTG TCCGACGCAT CGCGCTGCTG GATTGGGCCG AAAAAAAATC GGGCTGGATC
GTCGAGGACG ACTACGACAG CGAGTTTCGC TATCTCGGAC GGCCGCTGCA GGCGCTAAAG
AGTCTCGATC GGTGTGATCG CGTGATCTAT TGCAGTACCT TCAGCAAGGC GATGTACCCT
GGTTTAAGGC TTGCCTATAC GGTTGTGCCG GAGCGTGCGG TGGAGCGCGT CGAACGAGTG
GCATGCAGCA TGAATGCCGG CTCGCCAACG CTGTTGCAGG CGGCCCTCGC GGATTTCATC
GAACAGGGGC ACTTTGCCCG GCATCTGAAG CGGATGCGTA CGCTGTACGG CGAGCGGCGC
ACGCTGATCG TGCGCGCATT GCGGCAGGCG TTCGGCGAGC GGCTGATCGT CGAATTGCCG
CCCGGCGGCA TTCAGTTCGC GGTGCGGTTC GCAGAGGGGC CGGAAGGACC GGTCGACGAC
GTCGCCGTTG CAGCGCGTGC CCGCAACGCG GGACTTGCGG TCCTGCCGCT TTCGATCTGG
TATTCAAACA GTCATACGCG ACAAACGCCG CGCGGCCTCA TCATCGGATT TGCAAACATC
GCCGATGCGG ACGAAGCGCA CCGTCTCGCA CAAACGCTGC GTGCATGCTT GGATTGA
 
Protein sequence
MPEQTSTLTI EIDRQNQLPI YLQICERFRT AIAAGHLRPG DRVPALRGLA TQLSTARGTV 
EQAYTILVDE GYLQMRGAAG TFVSPSLPKS VTRPPPKRTD DSASFQASDM SRDSQPPRRP
QPIAVAMSGE PRPLQPGLPA FDAFPRKVWH RLVSQRASSG ERALLGYPNP AGYRPLREHI
ATYLTLSRGV TCMPEQVFIT SGYRATLELV LRSLARPNDR VWFEDPGYLL ARSFLSETGV
QLVPVPVDTE GIDVERGMQL DAQARFALVT PSHQSPLGHT LSLVRRIALL DWAEKKSGWI
VEDDYDSEFR YLGRPLQALK SLDRCDRVIY CSTFSKAMYP GLRLAYTVVP ERAVERVERV
ACSMNAGSPT LLQAALADFI EQGHFARHLK RMRTLYGERR TLIVRALRQA FGERLIVELP
PGGIQFAVRF AEGPEGPVDD VAVAARARNA GLAVLPLSIW YSNSHTRQTP RGLIIGFANI
ADADEAHRLA QTLRACLD