| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5547 |
|---|
| Symbol | |
|---|
| ID | 6182346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 42516 |
|---|
| End bp | 44150 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641688679 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001815543 |
|---|
| Protein GI | 172064831 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.730505 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAGA GACACTGGAT CGGCTCGTAC GGCTCGATCC CCGCCGAGAT CGACGCCGAT
CGCCATCCTT CCGTAACCGC GTTGCTGGAC GACCCGATGC GCCGCTTCGC GGAGCGCCCC
GCGTTCCACG CGTTCGGCCG CACGCTCACC TATGCCGACG TCGACCGCCT GTCGACCGCG
CTGGCCGCGT ACCTGCAGCA GGTCGCGGGC GTACGCAAGG GCGACCGCGT GGCCGTGATG
CTGCCCAACG TGCTCGCCTT TCCGGTGGTG TTCGTCGCGC TCGCGCGGAT CGGCGCGATC
CAGGTCAACG TGAATCCGCT CTACACCGCG CATGAGCTCG AACATCAGCT CAACGACGCG
GGTGTCGAAG TGGCCGTGGT ATGCGGTGGA TCGATGGGCA CGTTCGCCGA TGTGGTCGGC
AGGACGCGCA TACGAACCGT GCTGAGCGTG GGCCGCGGCG ATCTCGGCGT CGTCGATGCG
CCGGCCGGCG CGTGCGATGC GCTGCCGCCC GGCTCGATCG CACTCGCGCA CGCGCTGGCC
GCCGGCGAAT CGCTCGCGGT CGAGCCGGTC GCGCTCGGCG GCGACGATCT GCTGCTGCTG
CAGTACACGG GCGGCACGAC CGGGCTGTCG AAGGGCGCCG CGCTGTCGCA TCGCAACCTG
GTCGCGAACA TCGAGCAGTT CGGCGCGATC GTGCCGGGCG CGCGGCAGCC GGGCGAGGAG
GTCGTCGTCA CGGCGATCCC GCTGTATCAC ATCTTCGCGC TGACGGTGAA CTTCCTGTCC
TACTTCGCGA TCGGCGCGGA GAACTGGCTC GTCGCGAATC CGCGCGACAT GGACGGCTTC
ATCGACGTGC TGAAGGCCGC GCGGCCGTCG GTGTTCGTCG GCGTCAATAC GCTGTATGCG
GGGCTCGCCG CCCATCCGCG GCTGAACGAG GTCGACTGGT CGCGGCTGAA GCTGTCGGCC
GGCGGCGGCG CGGCGGTGAT CGACGTGATT TCCGCTCGCT GGAAGGCGGT GACGGGCAAC
TTCATCCGCG AAGGGTACGG GCTGTCGGAA ACGTCGCCGG TGGTCACGTT CAACCCGCAG
TCGATCGACG CGTTCACGGG CACGACGGGC CTGCCGCTGC CGTCGACCGA CGTGAAGCTG
CTGGACGACC AGGATCGCGA GGTGGCGATC GGCGAAGCGG GCGAAATCTG CGTGAAGGGG
CCGCAGGTGA TGGGCGGCTA CTGGCGCAAG CCGGACGCGA ACGCGGCCGC GTTCACCACG
GACGGCTACT TCCGCACCGG CGACATCGGC GTGTTCGACG CGGCCGGCTT CCTGAAGATC
GTCGACCGCA AGAAGGACAT GATCATCGTG TCGGGCTTCA ACGTGTACCC GAACGAGGTG
GAAGCGGTTG CGACCGCGTT GCCGGGCGTC GCCGAATGCG CGTGCATCGG CGTGCCGGAC
GAGCGCACCG GCGAGGCCGT CAAGCTGTTC GTGGTGCCCG CGCCCGACGC GGCCCTGACC
GACGCGCAGA TCGTCGCGCA TTGCCGCGCG AACCTCGCCG CGTACAAGGT GCCGAAGCTG
ATCCGCCTGG TCGACCGGCT CCCGAAGTCG ACGGTCGGCA AGATCCTGCG CCGGGAACTC
AGCCGCGCGG ACTGA
|
|---|
| Protein sequence | MTKRHWIGSY GSIPAEIDAD RHPSVTALLD DPMRRFAERP AFHAFGRTLT YADVDRLSTA
LAAYLQQVAG VRKGDRVAVM LPNVLAFPVV FVALARIGAI QVNVNPLYTA HELEHQLNDA
GVEVAVVCGG SMGTFADVVG RTRIRTVLSV GRGDLGVVDA PAGACDALPP GSIALAHALA
AGESLAVEPV ALGGDDLLLL QYTGGTTGLS KGAALSHRNL VANIEQFGAI VPGARQPGEE
VVVTAIPLYH IFALTVNFLS YFAIGAENWL VANPRDMDGF IDVLKAARPS VFVGVNTLYA
GLAAHPRLNE VDWSRLKLSA GGGAAVIDVI SARWKAVTGN FIREGYGLSE TSPVVTFNPQ
SIDAFTGTTG LPLPSTDVKL LDDQDREVAI GEAGEICVKG PQVMGGYWRK PDANAAAFTT
DGYFRTGDIG VFDAAGFLKI VDRKKDMIIV SGFNVYPNEV EAVATALPGV AECACIGVPD
ERTGEAVKLF VVPAPDAALT DAQIVAHCRA NLAAYKVPKL IRLVDRLPKS TVGKILRREL
SRAD
|
|---|
| |