Gene BamMC406_5546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5546 
Symbol 
ID6182345 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp41353 
End bp42474 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content68% 
IMG OID641688678 
ProductAraC family transcriptional regulator 
Protein accessionYP_001815542 
Protein GI172064830 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.883146 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGCGC AAGCCCCGAC AGTCCGCGCC GGGCCGCTCA AGTACAATGC GAGCGGTTCG 
ACCGACGGGG ACGCGATGAC CGGTTCAGAC TCACCTTCCG CCCAGCCCGG GCGTGCGCTG
CCGTCGCCGA GCGCGACGGT GCCGATCTCG CTCGTCAACG GTTTTCTGGC GAGCGCGGGC
GCGCAGCGCG ACGTGGTCGA GCGCTACCTG CGCGGGGCCG GCATCCCGCT CGAGCTGCTC
GGCGAGCCGC ATGCGCGCGT GACGGAAGAG CAGTTCTCGA CGCTGTACCG CACGCTCGCG
ATCGATCTCG ACGACGAGAT GCCGGGCATC TTCTCGCGCC CGTTGCGCGG CGGCACGCTG
AAGTACCTGT GCCTGAGCCT GCTCGATGCG CGCAACCTCG AAACGGCGCT GCATCGTTTC
GGCCAGTTCT TCCATATCCT GCTCGACGAC TTCTTCGTAG ACTCGAAGCG CGACGGCCTG
GTCGCGCAGG TGCTGCTGCG ACCGAACCCG GCCATCGGCC CGATCGGCGC GCTCGGCCAG
GAGCTGATGC TCAAGCTCGT GCACGGCGTG TGTTCCTGGC TGATCGGGCA GAAGATCCCG
CTGCTGCGGA TCGAGCTCGC GTGTCCGCGG CCGCGCCATG CGGTCGAACA CCTGTACTTC
TTCTCCGGCT CCGTGCAATT CGACTGCGAA CGCACGCTGA TGCGCTTCAG CGCCGACTAC
CTCGACGCGC CGATCCGGCA GAGCAAGCGC AACCTGCGCA AGTTCCTCGC GCGCGCGCCG
GGCGACTGGA TCTTCGAATC GTTCAGCGAG CAGCTCGTGT GCCATCGCGT GCGGCAATAC
CTGTCGGCGG CGCTGCCCGA CCTGCCGGTG ATCGACGAGG CGGCCGAGCA TCTGCATTGC
TCGGTGCGCA CGCTGAGCCG CCACCTCGCC GCCGAAGGCA CGACATTCCA GGCGCTCAAG
GACGAACTGC GGCGCGACAT CGCGATCCAG CGGCTCACCG ACACGCTCGA CACGATCGCG
GCGATCGGCG CCGATATCGG CTTCGACGAT CCCAGCGCGT TTCATCGCGC ATTCCGGCAC
TGGACGGGGA GTACGCCGGG GACTTACCGG CGGCGCGCGT AG
 
Protein sequence
MPAQAPTVRA GPLKYNASGS TDGDAMTGSD SPSAQPGRAL PSPSATVPIS LVNGFLASAG 
AQRDVVERYL RGAGIPLELL GEPHARVTEE QFSTLYRTLA IDLDDEMPGI FSRPLRGGTL
KYLCLSLLDA RNLETALHRF GQFFHILLDD FFVDSKRDGL VAQVLLRPNP AIGPIGALGQ
ELMLKLVHGV CSWLIGQKIP LLRIELACPR PRHAVEHLYF FSGSVQFDCE RTLMRFSADY
LDAPIRQSKR NLRKFLARAP GDWIFESFSE QLVCHRVRQY LSAALPDLPV IDEAAEHLHC
SVRTLSRHLA AEGTTFQALK DELRRDIAIQ RLTDTLDTIA AIGADIGFDD PSAFHRAFRH
WTGSTPGTYR RRA