| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5539 |
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| Symbol | |
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| ID | 6182338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 33676 |
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| End bp | 34410 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641688671 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001815535 |
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| Protein GI | 172064823 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.101629 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAC TGAATGGAAG GACCGCCGTG ATCACCGGTG GCGCTACCGG CATCGGCCGC
GCTGCGGCAA GACGCTTCAT CGAAGAGGGC GCCTTCGTCT TCATCTTCGG CCGCCGGCAG
GAAGCGCTCG ACGCCGCGGT GGCCGACCTT GGGCCCAATG CCCGCGCGGT GAAGGGCTCG
GTCTGCGAGC TGACCGACCT CGACCGGCTC TACGCGGCGG TCAAGGCGGA GCGCGGAACG
CTCGACATCG TCTTCGCCAA CGCCGGGGCG GGAAGCCCGC TGCCTCTGGG CCAGATCACC
GCCGAGCACA TTGACGACAC CTTCGACACC AATGTGAAGG GGACGATCTT CACGGTCCAG
AAGGCTCTGC CGCTGATGGG CGCGGGCGGT TCGATCATCC TGACCGGATC GAGCGCCGGC
ACCACGGGGG CCCCGGGGTT CACGGCCTAC AGCGCGAGCA AGGCAGCGGT GCGCAACCTC
GCGCGGACGT GGGCGGAGGA CCTGAAGGGC ACCGGCATCC GCGTAAACGT ACTGTCGCCC
GGGGCGACCG CAACCGAACT CGCCAAGGAG GCGCTGGGCG AAGAGGGGCA GAAGGCCTAC
GGGGCGATGA CGCCGCTCCA GCGTATGGCC GATCCGGCCG AGATCGGTGC GGTGGCGGCC
TTTCTTGCGT CGTCGGACAG CAGCTTCATG ACCGCCAGCG AGGTTGCCGT TGACGGTGGC
CTGGCACAAC TCTGA
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| Protein sequence | MNRLNGRTAV ITGGATGIGR AAARRFIEEG AFVFIFGRRQ EALDAAVADL GPNARAVKGS
VCELTDLDRL YAAVKAERGT LDIVFANAGA GSPLPLGQIT AEHIDDTFDT NVKGTIFTVQ
KALPLMGAGG SIILTGSSAG TTGAPGFTAY SASKAAVRNL ARTWAEDLKG TGIRVNVLSP
GATATELAKE ALGEEGQKAY GAMTPLQRMA DPAEIGAVAA FLASSDSSFM TASEVAVDGG
LAQL
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