| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5519 |
|---|
| Symbol | |
|---|
| ID | 6181975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 4595 |
|---|
| End bp | 5872 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641688652 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001815516 |
|---|
| Protein GI | 172064804 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.524338 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCAA CAAGAAATGT CGAGGAAGTC TCACTGCGGG CCGGATCCGG CTCGTCCTGG
TACGCGGAAC TCGATCCCGC CGGCAAGCGC GCGTTCAAGG CGTCGTTCGC CGGCTGGGCG
ACCGATGCGT TCGACTTCAT GGTGTTCAGC TTCGTGCTGG CTTCGCTGAT CGACCTGTGG
GGCCTCGATC GCGGCAAGGC CGGCCTGTTG AGCACCGTGA CGCTGATTTT CTCGTCGGTG
GGCGGCTGGA TTGCCGGCAT CCTCGCGGAT CGCTACGGAC GGGTCAAGGT ACTGCAAGGC
ACGATCCTGT GGTTCTCGGT CTGCACGCTC GCGATCGGCT TCGCGCAGAA CTTCGAGCAG
ATCTTCGTGC TTCGCGCGCT GCAAGGGCTC GGGTTCGGCG GCGAATGGGC GGTGGGCGCC
GTGCTGATCG GCGAGATCGT CGCGCCCGCA CATCGCGGCA AGGCGGTCGG GCTGGTACAA
AGCGGCTGGG CAATCGGCTG GGGTTGCGCG GCGATTCTCT ACAGCATTGC GTTTTCCGTC
CTGCCCGAGT CGCTGGCGTG GCGCAGCCTG TTCTGGGTGG GCATCGTGCC TGCCCTGCTC
GTGCTCTACA TCCGCAAGCA CGTGCCGGAG CCCGACGTGT TCGTGCAGGC GGACGCCGCC
CGGAAACACG GCGCGAGCCA GCCGTCGGTG TGGGCGATCT TCTCGCGTTC GCAGGTGCGA
CGCACGGTCC TCGCCGCGCT GCTGTGCACG GGCATCCAGG GCGGCTTCTA TGCGATGTCC
ACCTGGCTGC CGGCCTTCCT CAAGATCGAG CGACACCTGT CCGTGCTCAA CACGAGCGCT
TATCTGTTCG TGATCATCGT GGGGTCGTTC TGCGGATATG TCGTCGGCGC GTACCTTTCC
GACTTCTGGG GACGCCGGCG CAACTTCATG CTGTTTTCCG CGCTGTCGCT CGTGTCGGTG
TGTCTGTACC TCACATTGCC GCTGTCGAAT GCGCAGATGC TGTGGCTGGG CTTTCCGCTG
GGCTTTTCTT CGTGCGGGAT CTTCAGCGGG GTCGGCGCCT ACCTGACGGA ACTGTATCCG
TCGAACTTCC GCGCGAATGC GCAAAGCTTC ACGTACAACT TCGGGCGCGG CATTGGCGCG
CTGTTCCCGA GCCTCGTCGG GGTGCTGAGC CATTCGCTCG GCCTGGCGCT GGCCATCGCG
ATCTTTTCGG GCGCGGCCTA TGGCGTGGTG CTGTTGGCGG TGCTCCTGTT GCCGGAGACG
AAAGCGCGAT CGCTTTGA
|
|---|
| Protein sequence | MTPTRNVEEV SLRAGSGSSW YAELDPAGKR AFKASFAGWA TDAFDFMVFS FVLASLIDLW
GLDRGKAGLL STVTLIFSSV GGWIAGILAD RYGRVKVLQG TILWFSVCTL AIGFAQNFEQ
IFVLRALQGL GFGGEWAVGA VLIGEIVAPA HRGKAVGLVQ SGWAIGWGCA AILYSIAFSV
LPESLAWRSL FWVGIVPALL VLYIRKHVPE PDVFVQADAA RKHGASQPSV WAIFSRSQVR
RTVLAALLCT GIQGGFYAMS TWLPAFLKIE RHLSVLNTSA YLFVIIVGSF CGYVVGAYLS
DFWGRRRNFM LFSALSLVSV CLYLTLPLSN AQMLWLGFPL GFSSCGIFSG VGAYLTELYP
SNFRANAQSF TYNFGRGIGA LFPSLVGVLS HSLGLALAIA IFSGAAYGVV LLAVLLLPET
KARSL
|
|---|
| |