| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6771 |
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| Symbol | |
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| ID | 6181694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | - |
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| Start bp | 267769 |
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| End bp | 269196 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641685517 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001812422 |
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| Protein GI | 172064772 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCGA TTCGGGTCCA AGCGATTGGC GACTTGTTCC GCCGGTACGG CATGGTGTTC
CGCGCTGCGT GGAGCATCAG GAAACAACTC GATACCCAGC CTCGTCCGGA TCACGAGCTG
CAGTTCTTGC CTGCGAACCT CGAACTGATT GAAACACCCC CCCATCCCGC ACCTCGATGG
ACGATGCGGT TCATCGTTGC GCTGGTCTGT ACCTGCCTCT TGCTCGCCGT GTTTGGTCGC
TTGGATATCG TCGCAACAGC AAAGGGCAAG TTGATTCCGA GTGCACGGGT GAAAGTTATT
CAGCCAGCCA TAACAGGCGT GGTCCGGAAA ATCCATGTAC GCGACGGGCA GCGCGTTGGA
GCCGGTCAGC CCTTAATTGA GTTGGACACG ACACAAGCGG CAGCGGATGC ACAGAAGTCT
CGATCTGCGA GGATTGATGC TGCGCTGGCA TCGGCTCGTG CACGTGCACT GCTGGCAGCA
CAACAAACCT CGACCATGCC ACACGTGACC GAAGTTGATG GTGCATCGCC ACAACAACTG
GCCGATGCTC AACATTTCGC CGACGGTGTG TATCGGGAAT ATTCGGACAA GCTGGCGGGC
GCTCGGGCTG AACTCATCAA GCAAGAGGCT GCCAGGATGG CCACTGAGCA ACAGGTGGCA
AAACTGCGCG CGACGTCGCC CTTGGCGCGA CGTGAGGCGA ACGACTACAA AGATCTGGCG
GCCGATAACT ATGTCGCGAA ACACGACTAT CTCTCCAAGG AACAAACAGC TCTCGAGCAA
GAGCACGAGC TGGCTGCTCA GCAGAGTCAC TTCCGGGAAC TTGCTGCGGG TGTGGTCGAA
CAACGCGCTG CGATCGAGTC CATCATGTCT CAGTTTCGGC GTGAACAACT TGATGCGTTG
GACAAGGCAA GTCAGCAATT TGCGCAGTCT CGTGAGGATG AGACGAAAGC CGAAACTCGG
CAGCGCTTGT TGACGCTTTA CTCGCCGGTC GCGGGAACAG TACAGCAATT GGCCGTCCAT
ACCCTTGGAG GAGTTGTCAC GACTGCCCAG GCTCTGATGG AGGTTGTTCC CGACGATGCC
GTCGAAGTTG AAGCCAATAT TGAGAACAAG GACATTGGAT TCGTGAATGT CGGGCAAGAT
GCTGTGGTGA AAATCGAGGC GTTCCCTTAC TCGCGATATG GATTCCTGAT GGGAAAAGTG
GTGGCAGTCT CGAATGACGC AATTCAGGAT AGAGACAAAA AGCTGGGCCT GTCGTTCATG
GCGAGGATTC GCCTTCCGTC CAGCCAAATG CGCATCGAGA ATAAATGGAT CGACCTCACA
CCCGGGATGC AGGTGACGAC GGAGATCAAG ACTGGCCGGC GTAGCGTTGC AGGTTATTTC
TTGGATCCGC TTATGCAGAA CGCTCAAGAG AGTCTCCGTG AACGGTGA
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| Protein sequence | MKSIRVQAIG DLFRRYGMVF RAAWSIRKQL DTQPRPDHEL QFLPANLELI ETPPHPAPRW
TMRFIVALVC TCLLLAVFGR LDIVATAKGK LIPSARVKVI QPAITGVVRK IHVRDGQRVG
AGQPLIELDT TQAAADAQKS RSARIDAALA SARARALLAA QQTSTMPHVT EVDGASPQQL
ADAQHFADGV YREYSDKLAG ARAELIKQEA ARMATEQQVA KLRATSPLAR REANDYKDLA
ADNYVAKHDY LSKEQTALEQ EHELAAQQSH FRELAAGVVE QRAAIESIMS QFRREQLDAL
DKASQQFAQS REDETKAETR QRLLTLYSPV AGTVQQLAVH TLGGVVTTAQ ALMEVVPDDA
VEVEANIENK DIGFVNVGQD AVVKIEAFPY SRYGFLMGKV VAVSNDAIQD RDKKLGLSFM
ARIRLPSSQM RIENKWIDLT PGMQVTTEIK TGRRSVAGYF LDPLMQNAQE SLRER
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