| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6689 |
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| Symbol | |
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| ID | 6181596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | - |
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| Start bp | 193468 |
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| End bp | 195348 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641685437 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001812342 |
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| Protein GI | 172064692 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCCCA GATTTCTCGA TCACTACAAC CGCGAACTGA CCTACATGCG GGAGTTGTCC
GCGGAGTTCG CCGCGCAGCA CCCGAAGATC GCCCGCCGGC TCGGCATGCA AGATATCGAG
ATCGCCGATC CGTACGTGGA GCGGATGATC GAGGCATTCT GCTTCATGTC GGCCCGTACC
CAGTTGAAGC TGGAGGCCGA ATTCCCGCGC TTCACGCAGC GACTGCTCGA GGTCGTGTAT
CCGAACTACG TCGCGCCGAC GCCCTCGATG GCTGTGGCGC GGCTGCACCC GAGCCTGCGC
GAAGGCGATT TCAGCAAGGG TTTCAAGGTA GCGCGTTACA GCGTGCTGCG TTCGTCGGTG
CCCCCGGGCG AGCAGACGGC CTGCGAGTTC CGCAGCGGCC ACGAAGTCAC ACTGTGGCCG
ATCGAGATCG TCGACGCGAA GCTGACCGCC GTGCCGCCGG ATCTTCCCGA CATGGAGCGC
AGCCTGATGC CGCACGTACA GCTGCGCGGC GCGCTGCGGC TGCGGCTGCG CACGGTCGGC
GAGATAAAGT TCTCGCAGAT CTCGGCACTC GACCGCGTGT CGCTCTACAT CGGCGGCGAT
GAGCGGATCG CGTCGCATCT GTTCGAACTG ATCCATGCAA GCAGCGTCGC ATCGGTTGTG
CGCGCATACG GCGCCGCCCG CACCGATTGC GCGGTCGTCG CGAAAAACCC GGTCGACTTC
GAAGGCCTCA GTCCCGAGCA GAGCCTGCTG CCGCAGATAT GGAATACGTT CCACGGACAC
AACCTGCTAC ACGAATACTT CACCTGCCGG CAGCGCTTCT ATTTCTTCGT GCTGACACAG
TTGCAGGCCG GCCTGTCCGC GATCGACGGC CAAGAAGCGG AAATCGTGCT GCTGCTGGAC
CGCCTGCCGG ACGAACTGGT GACGCACGTC GATGCGTCGA GCTTCCAGTT GTTCTGCACG
CCGATCATCA ACCTGTTTCC CCGGCGCACC GATCGCATCG AGATCAACCG GCAGTCGACA
GCGTTCCACT TGATACCGGA TCGCAGCCGC CCGCTCGATT ACGAGGTGTT CTCGGTGTCG
CGCGTGTTCG GCCAGAAAGC CGAGTCGTCG GCCGAAGTGG CGTTTAATCC GCTGTATCAG
ACGTTACACA GTGATATCGG CAATTACGGC CGCTATTTCT CGGTCCTGCG CGAGCCCCGC
ACGATGTCTG TCAATGCGCG CAAGTACGGC ACGCGCAGCC AGTACATCGG CACCGAGGTA
TTCGTTTCGC TCGTCGACCA GGCCGAAGCG CCGTATGCCG ACACGATCCG CTATCTGTCC
GTGGACGCGT GGCTGACCAA CCGGGACCTG CCGCGCCTGA TTCCTCGAAA CGGCGTCAAC
GACCTCACGA TGCAGGACTC GGTGCCGATC GAGGGCGTGA GCCTCGTGCA TCCGCCGAGC
GCGCCGCGCG AACCGTACGC GACGGGCCAG ACCGCCTGGC GGCTGATTCG CCAACTGAGC
TTCAATTACA TGCCGCTCGC GGAACTCGAT CATCGAGACG GCGGCCAGGC GCTGCGCAAC
ATGCTGCGGC TCTTCGTTGG CACGAGCGAG CACGAACAGC TCACGCAGAT CGAGAGCCTC
GTCGGCACGC GCACTGAACC CGTCGTGCGG CGCCTGCCCG AACACGGCCT GCTCGTATAT
GGGCGCGGCG TGCGCTGCGA ACTGACGATC GACGAGACCG GCTTCTCGGG CATGAGCCCC
TACCTGTTCG GTCTCGTGCT CGAGCAGTAC CTGTCGCGGC ACGTGTCGAT CAACGTCTTT
ACTGAGACGG AACTTCGCTC GATGCAACGC GGCCTCGTGA CGCGCTGGAA GCCCCGTATG
GGTGCACGGG GGGCGGTGTA G
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| Protein sequence | MDPRFLDHYN RELTYMRELS AEFAAQHPKI ARRLGMQDIE IADPYVERMI EAFCFMSART
QLKLEAEFPR FTQRLLEVVY PNYVAPTPSM AVARLHPSLR EGDFSKGFKV ARYSVLRSSV
PPGEQTACEF RSGHEVTLWP IEIVDAKLTA VPPDLPDMER SLMPHVQLRG ALRLRLRTVG
EIKFSQISAL DRVSLYIGGD ERIASHLFEL IHASSVASVV RAYGAARTDC AVVAKNPVDF
EGLSPEQSLL PQIWNTFHGH NLLHEYFTCR QRFYFFVLTQ LQAGLSAIDG QEAEIVLLLD
RLPDELVTHV DASSFQLFCT PIINLFPRRT DRIEINRQST AFHLIPDRSR PLDYEVFSVS
RVFGQKAESS AEVAFNPLYQ TLHSDIGNYG RYFSVLREPR TMSVNARKYG TRSQYIGTEV
FVSLVDQAEA PYADTIRYLS VDAWLTNRDL PRLIPRNGVN DLTMQDSVPI EGVSLVHPPS
APREPYATGQ TAWRLIRQLS FNYMPLAELD HRDGGQALRN MLRLFVGTSE HEQLTQIESL
VGTRTEPVVR RLPEHGLLVY GRGVRCELTI DETGFSGMSP YLFGLVLEQY LSRHVSINVF
TETELRSMQR GLVTRWKPRM GARGAV
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