Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6688 |
Symbol | |
ID | 6181595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010553 |
Strand | - |
Start bp | 192403 |
End bp | 193464 |
Gene Length | 1062 bp |
Protein Length | 353 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641685436 |
Product | type VI secretion protein |
Protein accession | YP_001812341 |
Protein GI | 172064691 |
COG category | [S] Function unknown |
COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.355803 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATGT TCAATTCCAC TCCGATCGAG GCCGGCTCGC CGCTGCATCC GGATTCGCTG CGCACATGGT TCGACGAGCG CGCGCCGTGG CAAGCGGGTT TCCTGAGCCT GCTGCGCACA ATCAGCGCAC GCGACCCGTC CATGCCGCAG CCCGGCACTG CCCGCTTGCC GAGAGAGGAG CCGTTCCGCG TCGGTCAGCA TCCGTCGATG GCGTTCGCCC CGCGTGAAGT CGCGGCGCTC GACTTGCGGG GCGGCCGGCT CGACGTCCGG CTTTTCGGGC TAGGGCTCTG GGGGCCGCAC GGCCCTCTGC CGCTGCACAT GACGGAACTG GCGTACAGCC GCTCGGAGAG TCAGCAGGAT CAGACACTCA TCGCATTCGC CAATCTGTTT CATCATCGCG CGCTCACGCT GTTCTACCGG GCGTGGGCGT CGGCGCAAGC GACGGTTTCG CTCGACCGGC CGGAGCACGA AACCTTCTCG TTCTATATCG GCAGCCTGAT GGGCACCGAT CCCGCCGAAG CAGTGCGCAT CCACCCGCCG GCGCACGCGC GCTACGCTGC GTCGGCGCAT CTGGTGCGCG AGGCGCGCAA TCCCGACGGT CTCGCGGCGA CACTATCCCA TTACTTCGGC GTGCCAGTGG CGGTCGACGA ATTCGTGCCG CACTGGATTC AGGTTTCCCG CACGGAGCGC TGCCTGCTCG GTGCGCCGGC GACATCGACC ATCATGGGCG AGGGCGCGCT GCTCGGCGAC ATGATCCCCG ATTGCCAGCA CAAGTTCCGA CTCGTAATCG GGCCGCTCGA TCTTGACCAG TACCTGCGCC TCACGCCCCA CGGCGACGAC CTGCCCACCT TGGTCGACTG GGTCCGCGCG TTCGTCGGTT ACGAATACGA CTGGGAAATC AAGCTGCTGG TCAAGCCGCA CGCCGCGCCG CCGGCACGCG CCGACAGCAC GCACCGGCTC GGTTACTCGA CCTGGCTCGG CGAATCCATG GACGACGAGC CCGTCGTCGG AATGGTGTTC GATCCCGAAA AATACTGCGA CCAACTGGAA AACTCAGCAT GA
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Protein sequence | MDMFNSTPIE AGSPLHPDSL RTWFDERAPW QAGFLSLLRT ISARDPSMPQ PGTARLPREE PFRVGQHPSM AFAPREVAAL DLRGGRLDVR LFGLGLWGPH GPLPLHMTEL AYSRSESQQD QTLIAFANLF HHRALTLFYR AWASAQATVS LDRPEHETFS FYIGSLMGTD PAEAVRIHPP AHARYAASAH LVREARNPDG LAATLSHYFG VPVAVDEFVP HWIQVSRTER CLLGAPATST IMGEGALLGD MIPDCQHKFR LVIGPLDLDQ YLRLTPHGDD LPTLVDWVRA FVGYEYDWEI KLLVKPHAAP PARADSTHRL GYSTWLGESM DDEPVVGMVF DPEKYCDQLE NSA
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