Gene BamMC406_6688 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6688 
Symbol 
ID6181595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010553 
Strand
Start bp192403 
End bp193464 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content66% 
IMG OID641685436 
Producttype VI secretion protein 
Protein accessionYP_001812341 
Protein GI172064691 
COG category[S] Function unknown 
COG ID[COG3520] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03347] type VI secretion protein, VC_A0111 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.355803 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATGT TCAATTCCAC TCCGATCGAG GCCGGCTCGC CGCTGCATCC GGATTCGCTG 
CGCACATGGT TCGACGAGCG CGCGCCGTGG CAAGCGGGTT TCCTGAGCCT GCTGCGCACA
ATCAGCGCAC GCGACCCGTC CATGCCGCAG CCCGGCACTG CCCGCTTGCC GAGAGAGGAG
CCGTTCCGCG TCGGTCAGCA TCCGTCGATG GCGTTCGCCC CGCGTGAAGT CGCGGCGCTC
GACTTGCGGG GCGGCCGGCT CGACGTCCGG CTTTTCGGGC TAGGGCTCTG GGGGCCGCAC
GGCCCTCTGC CGCTGCACAT GACGGAACTG GCGTACAGCC GCTCGGAGAG TCAGCAGGAT
CAGACACTCA TCGCATTCGC CAATCTGTTT CATCATCGCG CGCTCACGCT GTTCTACCGG
GCGTGGGCGT CGGCGCAAGC GACGGTTTCG CTCGACCGGC CGGAGCACGA AACCTTCTCG
TTCTATATCG GCAGCCTGAT GGGCACCGAT CCCGCCGAAG CAGTGCGCAT CCACCCGCCG
GCGCACGCGC GCTACGCTGC GTCGGCGCAT CTGGTGCGCG AGGCGCGCAA TCCCGACGGT
CTCGCGGCGA CACTATCCCA TTACTTCGGC GTGCCAGTGG CGGTCGACGA ATTCGTGCCG
CACTGGATTC AGGTTTCCCG CACGGAGCGC TGCCTGCTCG GTGCGCCGGC GACATCGACC
ATCATGGGCG AGGGCGCGCT GCTCGGCGAC ATGATCCCCG ATTGCCAGCA CAAGTTCCGA
CTCGTAATCG GGCCGCTCGA TCTTGACCAG TACCTGCGCC TCACGCCCCA CGGCGACGAC
CTGCCCACCT TGGTCGACTG GGTCCGCGCG TTCGTCGGTT ACGAATACGA CTGGGAAATC
AAGCTGCTGG TCAAGCCGCA CGCCGCGCCG CCGGCACGCG CCGACAGCAC GCACCGGCTC
GGTTACTCGA CCTGGCTCGG CGAATCCATG GACGACGAGC CCGTCGTCGG AATGGTGTTC
GATCCCGAAA AATACTGCGA CCAACTGGAA AACTCAGCAT GA
 
Protein sequence
MDMFNSTPIE AGSPLHPDSL RTWFDERAPW QAGFLSLLRT ISARDPSMPQ PGTARLPREE 
PFRVGQHPSM AFAPREVAAL DLRGGRLDVR LFGLGLWGPH GPLPLHMTEL AYSRSESQQD
QTLIAFANLF HHRALTLFYR AWASAQATVS LDRPEHETFS FYIGSLMGTD PAEAVRIHPP
AHARYAASAH LVREARNPDG LAATLSHYFG VPVAVDEFVP HWIQVSRTER CLLGAPATST
IMGEGALLGD MIPDCQHKFR LVIGPLDLDQ YLRLTPHGDD LPTLVDWVRA FVGYEYDWEI
KLLVKPHAAP PARADSTHRL GYSTWLGESM DDEPVVGMVF DPEKYCDQLE NSA