| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6679 |
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| Symbol | |
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| ID | 6181568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | + |
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| Start bp | 176307 |
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| End bp | 180215 |
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| Gene Length | 3909 bp |
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| Protein Length | 1302 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641685427 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001812332 |
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| Protein GI | 172064682 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.79071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTATT TGAAACGTCT TTACTATTGG ATCTTTTCTC GGCGGATGTT GGCTTGCGTG
GCAGTCCTGC TGGCGTGCGT CGCAGTTTGG TTCCTGGGGC CGTTGTTCGT GTTTGGCGAC
TTGCATCCAT TCGCCGGCGA CGCGATCCGG GTGATCGCGA TCGCGCTGCT CATGGGCTGG
CTCGTTTTGC GCCTGCTAAG ATGGCCGTCA AGCCCGATCT GGGTGATTGC ACTTTGCGTC
GCGCTCTGGC ACGTGGGGCC GCTTTTCGGG ATGGGCGAGC GTCATCCTGT CGAGCCGATC
TGGGTACGGG TCCTGCTGAT TGCGACGATC GTTTTCTGCT ACGCAGCCTA CGGCCTGTAC
ATGTTGTGGC AGGCATTGCG GACGAACGAC GCGTTGCTGA CGCGCTTTCT CCAGCCGAAG
ACGGACAAGC CGATCGAAGC CGGGCGCGAC GAGATCCACG CGGTCGCCAT GGTGGTGTCC
AAGGCGATCG CTCAACTGAA GCGTCTGCGT GGCGGCACGC TGGGTTGGCG TCGTTTGCTT
GAGGTCGACC GGCACCTGTA CGGGTTGCCG TGGTACATGA TGGTCGGCAC AGCGGGGGCC
GGGAAGACCA CGGCGATCCT CGGTTCGGGC CTGCAATTTC CGCTGACCGA GCAGATGAGT
GCGCTGTCCG CTCAGGGCAT CGAACGCACC GTGAACTGCG AATGGTGGTT CGCGAACGAG
GCGGTGCTAA TAGATACCGC GGGTCGCTAC CTCGAGCAGG ACGATCCGCA GAACGAAATG
GCCAAGACCA TCAACGCGGC GGAATGGAAG GAACTGCTCG GTCAGTTGCG CAAGCATCGG
CCCCGGGCGC CGCTCAACGG CGCGATCCTG GCGGTCAGCG TCGCTGACCT GGTAAGCCGG
TCGGAAGCCG AACGCACCGC ACTCGCCGCG AACTTGCGCG CTCGAATCGG CGAACTTCGG
CAGCAGCTCG GGGTTCGTTT CCCGGTATAC GTGTTTGTGA CGAAGCTGGA CATGCTGGCG
GGCTTCACGG AGTATTTCCA GTCGCTGACC GCGGAAGGGC GCACCCAGAT CTGGGGGTTC
ACGCTGCCCT GCAACGAGTC GGGCACATCA AGCGTCGCGG AGCTACGGCG TCACTGCGCG
CGCGAGCTGA CGTTGCTCGA GGCGCGGGTC GATGCTGGCT TGAACAACCG CTTGCTGGAG
GAATACGAGG GCGACCGCCG CAAGCGGCTG TACCCGCTGG CGCACGAATT CCGCAGCTTG
TCGGTGCAGC TCACGGATCT GCTCGAGCTG GTGTTCCTCG ATTCCCGCTA CGACGACGCG
CAACTCCAGC ACATGCTGCG GGGCGTGTAT TTCACGAGCG CGGAGCAGAC GGACCAGGTG
ATCGCCGCGG ATCGCGAGAC GGTGTTGCAG CGGCTGAGGC GCAAGCTGGC GCGCATACGC
GGGAATAGCG ATGCGGCGGC GCAGGTGCGC GGCGAGGGGG CGGTGTCGGG GCGTCGGAGC
TACTTCCTGC GCAACGTGTT CCAGCATGTG ATCGTGCCGG AAGCGCATCT GGTTCGTGCG
GATCTGAAGT GGGAGATTCG CTTTAGATTA ATGCGCTGGG CCGGTCATGT GCTGACCTTG
ACCCTGTTCG TCTGGCTCGT ATTCTCGCTC ACGGTGAGCT ACGAGAACAA CCATGCGTAT
CTGACCGCGA TTTCCGCCAA GGCGTCGGCG CTGGCTGCGC GTGCCGCGGC CTACGGCAAG
TCTCCGAAGC CGGCCGCAAT CGGCGGTTTG CTGGACGGCT CGAGAGATCT GCCGCGTTAT
CGCGATCTTG ATCTCGACGC GCCGGGCGGC GCGTACCGCT ACGGCCTCTA TGTCGTTCCG
GCGATCGTCG AGGCGTCGGA CGAGACCTAT CTGAGTCTGC TGAAACAGAC CTTGCTGCCG
CAGATCGCGC GGCGCGCCGA AAGCGCGCTG AGCACGCAGC TTGGCGAGCA AAACCCGGAC
GACGTCTACC GGACGCTGTC CATCTACCTG ATGCTGTACG ACGACAGCCG TTACGATGCA
AAGGCCGTGA AAGCCTGGGT GTTGCGCGAC TGGGAGCGTT CGGACAGTGC GGCGGAGATG
GGCGGTCGCA AAGCGATGGC GCGGCATCTG GATGCGCTAT TCGTCGACGG GCGTCCCGTC
AAGCCGACGG TGGCGCCGGA CGCGGCGCTC GTGCAGCGGG CGCGGCTCTT CCTGAGCCAG
AACTCTGCGC CGAAGCGGCT TTACGAGCGG GCGATCGGCG TGATGGAGAA GGAGGCACCC
GAAAACTTCA CGCTCTCGCA GGCGCTCGGG TTGCAAGGCG CGTCGCTCTT TAAGCTGGTG
GACGGATCGC GCTTCGAGCA GGGCGTTCCG GGACTCTACA CGTACGATGG CTATCACGCG
CTGTTCAATC AGCGCCTGCC GGAATTCCTC GCGCGTGCGC AGGAAGACGA CGATTGGGTC
ATGGGGCGCG CCGGCACGCG TTCCGACTGG ACGAAGTCGA TACAAGGCAT GCGCGTCGTG
ACGGCGAAAT CATCGCTCGC CGAGGACATT CGCCGCCAGT ATCTGATTGA TTACGGCAAC
TATTGGCAGC GGTTTCTCGC AGACATCCGG CCGGCCATGA GCGGCGAGAA TGGCCGTGAC
GGCACGCTGG CTCTCGATCT GGCGACGCTG CGCGCGCTCG CCGCGCCAGA CTCGCCGCTG
GTGCGGCTGG CGCGGGCGGT TGTCCGGGAA ACGTCGTTGT CGGTCGTCGA TACGCAAGAG
CCCACGTCGC TGAACGATCT CGCGCTGACG ACGGTGGGCC GCAAGTCCTC CACGGTAAAG
GCCGCGGCGG TCGAGGCGCG GAAGATCGCC GCGCAGCGGC CGGAACAGCG GCTCGAGAAA
GAACTCGTCG ACAACCGTTT CGCGGCGCTG CGCGAGGTCA CCACCGGTCA GGCGGACACC
GGCAGTGGCC CGGCGATGAC GGACAAGCCC GTTGCGGCGG GCGGAAAGGC GTTACAACTC
GACGCAGTCC TGACGCTGAT CAACGAGCAG TACACGCGAC TCGTCGTTGC GAACAACGCG
TTGTCGGCCA ACAGCATGCC GCCCGCCCTC GATATCGGCA CGACGTTGCA GACCGAGGCC
GAAAAACTTC CGGCGCCGCT GATGCTCGTG CTCGGAGGGA TCGCGACGCA GGTGGCGGAC
AAGGTCGGGC AGGAGGTCGG AGGGCTGCTC GTGATGCAGG TCGATACGAG CGTCGGGCAG
GGCTGTCGGC GCACGATCGA CGGAAAATAT CCGTTCACAC GCAGCAGCCA GGAAGTGGAC
GTCGAGGACT TCAACAGGAT GTTCTCAGCC GGCGGTGTAT TCGACGAATT CTTCCAGAAA
TCGCTCGCGA GCTACGTCGA CACAAACTCC AAGCCGTGGC GCTACAAGTC GTTGAGTCCC
GGCATGCCGC CGATCAAGGG GCCGAGTCTC GAGCCGTTCG AACGCGCTGC CGCGATCCGT
GAACTGTTTT TCCGCGATCA GGGTGCCAAG CGGATGGCTT GGAAGATGAA CGCCAAGGTG
GCGTCCATCG ATCCGGAGAT TACCGAATTG CTGATCGACA TTGACGGTCA GACGCAACGT
TACCTGCATG GGCCTGTCTC GCCGTTCCCG CTTAGCTGGC CGGGACCGCG CGGCGGCGCG
ATAGCCGAGG TCGCGGCCAA GCCCGCGATC CGGCCGGATA CGTCGACGAT CGTCGCGACC
GGACCGTGGG CGCTGTTTCG ATTGATCGAA CGAGGTCGGC TGACTGGCAC CGCGTCAGCC
AGCCGCTTGA CGCTGGATTT CGATTTCGAT GGCCGGCATG CGGCGCTGGA GTTGATGACG
GGCGGTCAGT TGAATCCGCT GACGAACGAT CTGCTGACGG GCTTTCATTG TCCGGGAGGT
CTCGCGTGA
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| Protein sequence | MSYLKRLYYW IFSRRMLACV AVLLACVAVW FLGPLFVFGD LHPFAGDAIR VIAIALLMGW
LVLRLLRWPS SPIWVIALCV ALWHVGPLFG MGERHPVEPI WVRVLLIATI VFCYAAYGLY
MLWQALRTND ALLTRFLQPK TDKPIEAGRD EIHAVAMVVS KAIAQLKRLR GGTLGWRRLL
EVDRHLYGLP WYMMVGTAGA GKTTAILGSG LQFPLTEQMS ALSAQGIERT VNCEWWFANE
AVLIDTAGRY LEQDDPQNEM AKTINAAEWK ELLGQLRKHR PRAPLNGAIL AVSVADLVSR
SEAERTALAA NLRARIGELR QQLGVRFPVY VFVTKLDMLA GFTEYFQSLT AEGRTQIWGF
TLPCNESGTS SVAELRRHCA RELTLLEARV DAGLNNRLLE EYEGDRRKRL YPLAHEFRSL
SVQLTDLLEL VFLDSRYDDA QLQHMLRGVY FTSAEQTDQV IAADRETVLQ RLRRKLARIR
GNSDAAAQVR GEGAVSGRRS YFLRNVFQHV IVPEAHLVRA DLKWEIRFRL MRWAGHVLTL
TLFVWLVFSL TVSYENNHAY LTAISAKASA LAARAAAYGK SPKPAAIGGL LDGSRDLPRY
RDLDLDAPGG AYRYGLYVVP AIVEASDETY LSLLKQTLLP QIARRAESAL STQLGEQNPD
DVYRTLSIYL MLYDDSRYDA KAVKAWVLRD WERSDSAAEM GGRKAMARHL DALFVDGRPV
KPTVAPDAAL VQRARLFLSQ NSAPKRLYER AIGVMEKEAP ENFTLSQALG LQGASLFKLV
DGSRFEQGVP GLYTYDGYHA LFNQRLPEFL ARAQEDDDWV MGRAGTRSDW TKSIQGMRVV
TAKSSLAEDI RRQYLIDYGN YWQRFLADIR PAMSGENGRD GTLALDLATL RALAAPDSPL
VRLARAVVRE TSLSVVDTQE PTSLNDLALT TVGRKSSTVK AAAVEARKIA AQRPEQRLEK
ELVDNRFAAL REVTTGQADT GSGPAMTDKP VAAGGKALQL DAVLTLINEQ YTRLVVANNA
LSANSMPPAL DIGTTLQTEA EKLPAPLMLV LGGIATQVAD KVGQEVGGLL VMQVDTSVGQ
GCRRTIDGKY PFTRSSQEVD VEDFNRMFSA GGVFDEFFQK SLASYVDTNS KPWRYKSLSP
GMPPIKGPSL EPFERAAAIR ELFFRDQGAK RMAWKMNAKV ASIDPEITEL LIDIDGQTQR
YLHGPVSPFP LSWPGPRGGA IAEVAAKPAI RPDTSTIVAT GPWALFRLIE RGRLTGTASA
SRLTLDFDFD GRHAALELMT GGQLNPLTND LLTGFHCPGG LA
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