Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6677 |
Symbol | |
ID | 6181566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010553 |
Strand | + |
Start bp | 173642 |
End bp | 174991 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641685425 |
Product | type VI secretion protein |
Protein accession | YP_001812330 |
Protein GI | 172064680 |
COG category | [S] Function unknown |
COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTGGT TTAACAAGGT CGTGTGGAGC GAAGGTCTTT TCCTGCTTCC CCAGCTGTTT CAGCAGCAAG AGCGCTATTT TGAACATTTC GCGCACAAGC GCGCGGCGCC GCTGAGCTCG TTCTTCTGGG GATTCAGCCA GTTCGACATC GATCAGGAGT CGCTTGCGTT CGGCAAGCTT GTGTTCAAGA GCGGAACCGG CATATTTCCG GACGGCACGC CGTTTGATGT GCCGGCGCAC GTACCGCCGC CGCCGCCGCT GACGATCGCG CCCGAGCATC AGAACCAGTT GATCTATGTG GCCGTCCCGC TGCGTCTGCC CAATACGGAG GAGACCGCGT TTCGCGATCA GACGGGTTCG CTCGCCCGTT ACAGGGCTTT CGAAAATGAG CTTCGGGACA GTAATGCGAT CGGCCAGGGC CCGAAGCCCG TGCAACTGGC GAACCTGCGC TTGCGGCTTT TGCCCGAGAA AGAGTTGACG CAGTCGTGGA TCGGCATCGC GCTGACGCGC ATTAAGGCAT TGCGTGTAGA CGGTTCGGTG TCGCTGCACG ACACTGATCA CATTCCACCG GTCAGCCAAT ATGGCGCCGA TCCGCTGCTG CGGGAGTGGG CCACTCAGTT GCACGGCCTC GCGAAGCTGC GCGCCGATGC GCTTGCCACT CGTCTGTCCG GTAGCGACGG GCGTGCTGGG GCGGCGGCGG AAGTGGCCGA TTACCTGTTG TTGCAGGTAC TGAATCGCTA CGAGCCGCTG CTTGAACATA TTTGCCGGAT TCGCGAGACG CCGCCCGTGG AGTTCTATCG TGAACTCGCG GTGATGGCCG GCGAACTGTC GACGTTCGTG CGTCCTCAGA CGCGGCGTCC GTTACCGACG CCGGGCTACG ATCACGCGCA GTTGTTTGGG AGCATCCGGC CGCTCGTCGA GGAAGTACAT TACCTGCTCA ACCAAGTACT GATACGTGGT GCACAGCCGA TTCCGCTAAC CGAGCAGCCA CACGGCATCC GCGTCGCTGC TGTGATGCCG GCCGAACTCT CGGGCTATTC GAGTCTCGTG CTCGCGGTCG GCGCGCAGAT GTCGCCGGAC GTGCTCCAGC AGCAATTCGC GTCGCAGACG AAGATCAGCC AGCCGCAGCG TCTGCCCGAA CTGATCCGCT CGCATCTACC GGGCCTCACG GTGGTGCCGT TGCCGGTTCC GCCGCGACAG ATTCCATTCA ATTCGAGCTA CATCTACTAC GAGCTGTCGC GGAGTGGCCC GTTCTGGGAG CAGATCGCGC AACAGGGCGG GCTTGCGATG CACATCGCAG GCCACTTCCC GGAACTGAAG GTCGAACTGT GGGGAGTCCG TCATAAATGA
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Protein sequence | MSWFNKVVWS EGLFLLPQLF QQQERYFEHF AHKRAAPLSS FFWGFSQFDI DQESLAFGKL VFKSGTGIFP DGTPFDVPAH VPPPPPLTIA PEHQNQLIYV AVPLRLPNTE ETAFRDQTGS LARYRAFENE LRDSNAIGQG PKPVQLANLR LRLLPEKELT QSWIGIALTR IKALRVDGSV SLHDTDHIPP VSQYGADPLL REWATQLHGL AKLRADALAT RLSGSDGRAG AAAEVADYLL LQVLNRYEPL LEHICRIRET PPVEFYRELA VMAGELSTFV RPQTRRPLPT PGYDHAQLFG SIRPLVEEVH YLLNQVLIRG AQPIPLTEQP HGIRVAAVMP AELSGYSSLV LAVGAQMSPD VLQQQFASQT KISQPQRLPE LIRSHLPGLT VVPLPVPPRQ IPFNSSYIYY ELSRSGPFWE QIAQQGGLAM HIAGHFPELK VELWGVRHK
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