| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6676 |
|---|
| Symbol | |
|---|
| ID | 6181565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010553 |
|---|
| Strand | + |
|---|
| Start bp | 173099 |
|---|
| End bp | 173638 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641685424 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_001812329 |
|---|
| Protein GI | 172064679 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3521] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03352] type VI secretion lipoprotein, VC_A0113 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.915611 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.974139 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCTC GATTTTTGTT CGGCACGACG ACGCGCCGCG GTGCAATCAG ACGCATCGCG
GCCGGACTAT CGTTTCTGCC AATGACTGCG TGTGGGAGCT TTCCGGCTCC CAAGGAGCAA
GCTTCGCTGA ACCTGAAGAT TAAGGTGAGC GATGGCGTCA ATCCGGACGA GCTGGGGCGA
GCCGCGCCCA TCATGGTGAG GATCTACGAG TTGAAGTCGG CATACACGTT CGACAACGCC
GACTTCTTCA CGCTGCAAAG CGACAGCAAA AAGGTGCTCG GCGAAGACGC GATCGTGATT
GACGAGTTCG TGTGTCGCCC GGGCGACGTC CGCAACATTC GTCGTCGATT GAATCCGGAG
ACCACGGTGA TCGGCGTGCT CGCGGGATAC CGCGATCTCG GCAAGTCAGT GTGGCGCGGG
GTTTACCGCC TGCCGTCGCC GCCGGACGAC GTGTGGCTCC GGGTGCTGAC AGCTCGCTTG
AAAATCAAAT TGAACGTTGA TGTCGGCCAG CGGGCCGTTC TGGTTACTGA ATTGGATTGA
|
|---|
| Protein sequence | MASRFLFGTT TRRGAIRRIA AGLSFLPMTA CGSFPAPKEQ ASLNLKIKVS DGVNPDELGR
AAPIMVRIYE LKSAYTFDNA DFFTLQSDSK KVLGEDAIVI DEFVCRPGDV RNIRRRLNPE
TTVIGVLAGY RDLGKSVWRG VYRLPSPPDD VWLRVLTARL KIKLNVDVGQ RAVLVTELD
|
|---|
| |