| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6669 |
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| Symbol | |
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| ID | 6181558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | + |
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| Start bp | 164304 |
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| End bp | 166874 |
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| Gene Length | 2571 bp |
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| Protein Length | 856 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641685417 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001812322 |
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| Protein GI | 172064672 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.124902 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGCG CAAACGATAT GTCGGCGATG CAGATGGCAG CCCACACCGC GGTGGCTCCG
ATTTCTGTGT CGTTCAACTC CCGACTGTTC GCCGGCAGTG GTGCCGATCT GTCGCGTTTC
GAGCGGGGCA ATCCGATCGA GGCGGGGAGT TACGCGGTCG ACGTATCCGT CAATGGGAAA
GCGCGCGGCA GTTACGACGT ATTGTTCCGC GCGGTCCCCG GTGGCGACGT CGCCATACCG
TGCTTCACGC TCGAGATGCT GGAGCGGTTG GGCGTCGACG GCGACCAGGT CGCGAATCGC
GTCCGGCAAT CGCAGGCGGT CGCGAAGGCG AACGGTGAGG AGGCGGCCGC GGCTACGCGG
GGAATCGCGC GGGAGGCTTG CTTCACGCTC CGCGAAACAC TACCAGGCTC AACCTATGCG
TTCGACAGCG CGGACCTGAA GCTTGAACTG ACGATTCCGC AAACCGGCAT GCGTAAGACG
GCCCAAGGCT ACGTCGATCC GTCACGGTGG GACGAGGGGA TCAACGTTGG GTTGCTGCAG
TACAACGTCA ACGGGTATAC GAGCGAGGGC ACGTTCACCG GACACAATTT TAGCAGCCTG
TATACCGGTC TGCTGTCGGG GCTGAACCTT GGCTCTTGGC ATTTTCGTCA CCGCTCGACG
CTGAATTGGT CGAGTGCCGG GTCAGGCATG TCCTGGCAAA GCATCGAAAC GTTTGTCCAG
CGGGATATCA CGGTGCTGCG CAGCCAGATC ACGCTTGGCG ACAGCTTCAC GAGCGGTGAG
CTGTTCGATT CGTTCGGCGT GCGCGGCTTG CAACTGTCGA GTGACGATCG CATGCTGCCG
AACTCGCTGC AGGCGTACGC GCCTACGATC CGTGGCGTCG CAGATACCAA CGCGCGTGTT
GTCGTGCGGC AGGGCGGCAA CACTCTCTAC GAGGCGACTG TCTCGCCGGG GGCGTTCGAG
TTCAACGATC TACCCGCCAC CGGCTATGGA GGCGACCTTG ACGTGGCGAT CACCGAATCG
GACGGGCGCA TACACCGCTT CTCGGTGCCG TTTGCATCGG TTCCGCAGCT GTTGCGGCCC
GGCCAGCAGC GTTTCAATTT CACCGTCGGC CAGTATCGGG ACACGTTCGT CTATACGAAG
CCATGGATCG CGCAGCTCAC ATACCAGCGT GGCATCACGA ACCTCGTTAC CGCGTATGCG
GGAGCGCTGT CGTCGGCCGG CTACGGGTCC GGCATGCTCG GCATGGCGCT CAACACGCCG
GTTGGCGCGT TCGCTTTCGA CGTCACGACG GCGCACACCA GCGTGCCTGG CATGAGCACG
TTCCACGGCG TCAGCTCCCG TGTTTCCTAC AGCAAAATGA TGACGTCGAC CGGGACCAAC
TTTTCGGCGG CCGCGTACCG GTATTCGACT GCGAACTTTT TCAGTCTCCA GGACGCTGTG
AGCGCGCGCA GCGATTGGGT GCGCTCGATT GGTCAGTACA ACTACCGGGC GCGCACGCGT
TTGCAGTTGA ACGTCAACCA GCGTCTCGGC GAGCGCAGCG CGATGTACGT AACCGGCAGT
TCACAGGACT ACTGGGGGGG CGAGCGGGGG CGGGACCTGC AGTTTCAGAT GGGCTTCAAC
AGCACATTCC GAAATATCCC GTATTCGGTG TACGTGCAGC GCACGAGAAA CGGCGACGAC
CGCACGGTCA CGCAGGTTGG GACCAACGTC TCGATCCCGC TCGGCAGGCA GACCTATACG
AAGCGCAGCA TCTTCGATTC GCTGACGGCA TCGGCATCGC GGGATTCCAC CGGCAGCAGC
GCCATCCAGA TGGCCCTGTC GGGCAGCCAG GGAAGCATCG CGCCGGTCAG CTACGGCATC
AACGCGTCGC GCATCGTCGG CGGCGACAAT CGTATTGCGT CGCTTGGCGC CTACGGCACC
TACCGGTCGC CGATTGGCAC GTACAACGCG AACGCGTCGG TCAGCAGCCA GGCGCGCCAA
GCGTCGTTCG GGGCGAGCGG CGCGATGATC GCGCATCGCG GCGGCGTCAC GCCGAGCCCG
CCGCTCGGCC AGGCGGCGGC GCTGATCGAG GCGAAGGGGG CGACGGGCGG CGCGGTCGTC
AATGGACAAG GGGCCTCGAT CGATCGCTTT GGCTATGCGG TAATTCCGTC GTTGACGCCT
TATCGCGTCA ACACTGTCGA GATCGACCCG TCCCGTCTTC CCGACGACGT TGAACTTAAG
AACACGAGCG AAGAGGTCGT GCCTCGCTAC AACTCGGTCG TGTTCGTGAA GATGGGCACG
GTGCGCGGGC GTCCAGTGTT CGCGACGATG CAGAAGTCGG ACGGCTCGCC GTTGCCGATG
GGCACCCAGT TGTTCGATGG CGCGGGCAAA TCGATCGGTG GCGTTGGCCA GGGCGGCATG
GCGTTCCTGC GCGGACTGGA AGGTTCCGGC GTGCTGTCCG CGAGGTGGGG GATTGGACCC
AAGGAACAGT GCCAGGTGCC CTACGCGATA CCTGCTGCAG TGGCGGGCAC AAGACGTGCC
GCGATCGTGA TGCGCGTGCG GCTGCGCTGC GGCCTGGAGG AAATGCAATG A
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| Protein sequence | MQRANDMSAM QMAAHTAVAP ISVSFNSRLF AGSGADLSRF ERGNPIEAGS YAVDVSVNGK
ARGSYDVLFR AVPGGDVAIP CFTLEMLERL GVDGDQVANR VRQSQAVAKA NGEEAAAATR
GIAREACFTL RETLPGSTYA FDSADLKLEL TIPQTGMRKT AQGYVDPSRW DEGINVGLLQ
YNVNGYTSEG TFTGHNFSSL YTGLLSGLNL GSWHFRHRST LNWSSAGSGM SWQSIETFVQ
RDITVLRSQI TLGDSFTSGE LFDSFGVRGL QLSSDDRMLP NSLQAYAPTI RGVADTNARV
VVRQGGNTLY EATVSPGAFE FNDLPATGYG GDLDVAITES DGRIHRFSVP FASVPQLLRP
GQQRFNFTVG QYRDTFVYTK PWIAQLTYQR GITNLVTAYA GALSSAGYGS GMLGMALNTP
VGAFAFDVTT AHTSVPGMST FHGVSSRVSY SKMMTSTGTN FSAAAYRYST ANFFSLQDAV
SARSDWVRSI GQYNYRARTR LQLNVNQRLG ERSAMYVTGS SQDYWGGERG RDLQFQMGFN
STFRNIPYSV YVQRTRNGDD RTVTQVGTNV SIPLGRQTYT KRSIFDSLTA SASRDSTGSS
AIQMALSGSQ GSIAPVSYGI NASRIVGGDN RIASLGAYGT YRSPIGTYNA NASVSSQARQ
ASFGASGAMI AHRGGVTPSP PLGQAAALIE AKGATGGAVV NGQGASIDRF GYAVIPSLTP
YRVNTVEIDP SRLPDDVELK NTSEEVVPRY NSVVFVKMGT VRGRPVFATM QKSDGSPLPM
GTQLFDGAGK SIGGVGQGGM AFLRGLEGSG VLSARWGIGP KEQCQVPYAI PAAVAGTRRA
AIVMRVRLRC GLEEMQ
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