| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6638 |
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| Symbol | |
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| ID | 6181785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | + |
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| Start bp | 130037 |
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| End bp | 132691 |
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| Gene Length | 2655 bp |
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| Protein Length | 884 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641685398 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001812303 |
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| Protein GI | 172064653 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00144126 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000000434399 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGAAAATC AAGCGCAACT GGAACTGAAG CGATTAACCG TGTTGATCGG GATCGCACTG
TCGACGCTGG CGGCAGCGGA CCCTGTTGGC GCCGAAACCG CTGCGCTGCC GCCTGAGTCG
TCCCCGTCAG TCGATCAAGC CGCGGGTGAC GAAGCGGTGG AGTTCGCGTC AGATTTCATG
GTGGGCGATT CTGTCGACGC GAGCCGGTTC AAGTTAGGCA ACCCGGTGCT TCCGGGGAAG
TATGCAGTCG ACCTGTACCT GAATGACGTC CTGGCTTCTC GGGAGAAAAT TCGTTTCGAC
GCGTCCCAGC CGAACGCTAA CGCGAAGCCA TGCTTGACGC GCGGGTTGCT TGATTCAATC
GGCGTCGATA CGACAAATTG GGTGAAGGGT GGGACGGGCA AGGGTGCTGC GCCGGTTGAT
CCGAACGAAT GCGTCGATTT GCCGGCGGCG ATTCCGGCGG CCGCGGTCTC CTACAATTCG
GCGGACCAGC GCCTCGATCT GAGCGTGCCG CAAGCATCAT TGCGCAATGC GGTGCGCGGC
GAGGTCAACC CGTCACGATG GGATCGGGGC GAAACGGCTG GAATCGCTCA GTACGACTTC
AATGCGTATC ACTCGAATAG CGGTGGGCGC GACAGCAACA GCGTGTATCT CGGTCTGACG
GCTGGGGTGA ATCTCGGCAA TTGGCGGTTC CGCCATCGCG GCTCGATGAA CTATAGCGAC
TATGCCGGTA CACGATGGCA GTCGCTGGAG ACTTATGCGC AACGCGACCT GACGGGCCTG
GGGGCCCAAT TGACACTGGG CGACAGCATC ACGCCTGGCG ACGTGTTTGA CGGCTTCGGT
GTGCGCGGGG TGCAGATTAC CTCGGACGAC CGGATGTTGC CGGATTCTCT GCGTGGATTT
GCGCCGACGG TGCGCGGGGT TGCCCAGTCG AACGCGAAGG TCGAAATCAA GCAGAACGGC
GCCGTGATCT ACCAGACCAC GGTGGCGCCG GGGCCGTTCG AGATCCGTGA CCTGAACCCG
ACGGGCTACG GCGGCGATCT GGAAGTGACC GTAACGGAAG CCGATGGATT CAAGAAGAGC
TTCTCGGTGC CCTATGCGAC CGTTCCGCAA CTGCTGCGGC CAGGCGTATC GCGCTTCAGC
GTAGCTGCGG GCCAGTATCG CAGCCTGAGC AACGACGCTC GGCCCTATAT CGGGCAGGCG
ATTTACCAGC GCGGGCTGAC GAACCTGATC ACTGGCTACG GTGGAGTGAT CGGTTCGAAG
CGCTATGGCG CCGCGTTGAT GGGGGTGGCC GTCAATACCT CTGTCGGAGC ATTGGCGCTG
GACGTGACGG CCGCACATAC GCGGATTGGC AATGAGCGCT TTCGTGGTCA AAGCTGGCGG
GTGAGTTTTG CGAAGTACGT GCCGCAGACC GACACCAGTT TGACGATGGC GGCGTACCGC
TACTCAACGT CAGGGTATTT CAGCCTGGCC GATGCGGTGG CGTCACAGCG CTTCGAATCG
TCAAACTATG CGGTATCCAC GGTGCAGCGC CAACGTAATC GGGCGCAAAT CAACATCAGC
CAGAAGATCG GTTCGGGCTC GGTGTATTTG ATGGGCAGTG CGCAGGACTA CTGGAATAGT
ACGGGTAGCG ATCTGCAGTT CCAGATCGGG TATTCGAACA GCGCGAAATG GGGAAGTTAC
AGCCTGTCGG CGCAACGTAC ACGGAATGCG TACGGCCACC AGGACACACA GTACTTCGCC
TCGGTATCGC TGCCGTTTGG CGGTCGTCGG GCCGATAGCC GGCCGTTGTT CTCGAGCCTG
AACACGTCGG TGACAGCCGG CGGCAACGGT GCTACGTCGA TTCAGACGTC GGCGAGCGGT
TCGGCCGGCG CGCAGAACCA GTGGTCGTAT GGCCTGAATG CAGGCTATAC GGGCGATTCG
CGCGACCATG CAGCGTCGTT GGGTGCGTAC GGCGCCTATA ACGGTGGCAA GGGCTCGGTC
AACGTTTCTG CGTCGGCGGC CAAGGGTTCA ACCCAGGCAT CCCTGGGGCT GTCGGGGGCG
CTGGTGGCGC ATAAGGGCGG ACTGACGCTC GGCCAAAGCG TGAGCCCGAA CGATCCGATC
GGCTTGATCG AGGCCAAGGG AGCGATGGGT GCGACCGTTA CCAACGCCTC GGGCGTGACC
GTGGATAGTC GCGGTTATGC GGTGGTGCCG TACATGATGG CATACCGGAT CAACACGCTC
ACGCTGGATC CGCAGGGGAT GTCCGAGAAT GCAGAGCTGG AAAGCTCCAG CCAGGACGTC
GTGCCACGTG CCGGCGCTGT GGTGCGGGCC AAGTTCGAAA CGAAGGTAGG TAAGCCAGTG
CTGATGCGCG TGCGCACGAA CGACGACAAG CCGGTGCCCA TGGGCGCGGA TGTGTTCGAT
AGCTCGGGGA GCAGCGTGGG CGTGGTGGGG CAGGGCGGCA CGGTATTCGT GCGCGGCGTG
CCGGACGCGG GCGAGTTGTC AGTGCGATGG GCTCAAGGTC CCGAGGGCGA ATGCACGTTC
CGCTATGAGC TGGATGTCAC GGGCACGGGC AATACCGAGA GATGCGCGAC GACTTCCGAT
CACGGATGGG GGGTGCCACT GGCCAGGCCC CAAGGCAATG CCGAGGGCAA CGAAGCAGGC
GCGGGTACTC CTTGA
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| Protein sequence | MENQAQLELK RLTVLIGIAL STLAAADPVG AETAALPPES SPSVDQAAGD EAVEFASDFM
VGDSVDASRF KLGNPVLPGK YAVDLYLNDV LASREKIRFD ASQPNANAKP CLTRGLLDSI
GVDTTNWVKG GTGKGAAPVD PNECVDLPAA IPAAAVSYNS ADQRLDLSVP QASLRNAVRG
EVNPSRWDRG ETAGIAQYDF NAYHSNSGGR DSNSVYLGLT AGVNLGNWRF RHRGSMNYSD
YAGTRWQSLE TYAQRDLTGL GAQLTLGDSI TPGDVFDGFG VRGVQITSDD RMLPDSLRGF
APTVRGVAQS NAKVEIKQNG AVIYQTTVAP GPFEIRDLNP TGYGGDLEVT VTEADGFKKS
FSVPYATVPQ LLRPGVSRFS VAAGQYRSLS NDARPYIGQA IYQRGLTNLI TGYGGVIGSK
RYGAALMGVA VNTSVGALAL DVTAAHTRIG NERFRGQSWR VSFAKYVPQT DTSLTMAAYR
YSTSGYFSLA DAVASQRFES SNYAVSTVQR QRNRAQINIS QKIGSGSVYL MGSAQDYWNS
TGSDLQFQIG YSNSAKWGSY SLSAQRTRNA YGHQDTQYFA SVSLPFGGRR ADSRPLFSSL
NTSVTAGGNG ATSIQTSASG SAGAQNQWSY GLNAGYTGDS RDHAASLGAY GAYNGGKGSV
NVSASAAKGS TQASLGLSGA LVAHKGGLTL GQSVSPNDPI GLIEAKGAMG ATVTNASGVT
VDSRGYAVVP YMMAYRINTL TLDPQGMSEN AELESSSQDV VPRAGAVVRA KFETKVGKPV
LMRVRTNDDK PVPMGADVFD SSGSSVGVVG QGGTVFVRGV PDAGELSVRW AQGPEGECTF
RYELDVTGTG NTERCATTSD HGWGVPLARP QGNAEGNEAG AGTP
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