| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6627 |
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| Symbol | |
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| ID | 6181720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | + |
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| Start bp | 118137 |
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| End bp | 119972 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641685387 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001812292 |
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| Protein GI | 172064642 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0378674 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCGCG AATCGCATCC GGATGATATT ACGTGGCTGC TCGATCGCGG CGACGTCGTG
GGGGCGAATG AGCAATTGAC GCATAGACAG GCATGGGGCT CGTCTGATCC TCGGGAGCGG
GTCATGTGGG CGCGGTTAAT GCTGCTGCGT GGCCGGCATG ACGCGGCGGC CAATACTCTC
GAGCAGGCCA GACAACTTGA TCCCACGTGT GATGCCGTGT ATGAAGTCTA CGCCCAGTTA
TGCCTGGTCA CTGGCCGCGT CCAAGAGGCG ATGTCGTGGT TCGATCACGC CTATGCGCAT
GCGGATCCAG CGTCGAGCTG GATACTCGTC TGGGCCGATC TGTTGATACA ACAAGGCGAT
CTCACGCGCG CGATTGCAGT GGCCGATCGT TATTGTTGCA GCGCGCCTGC GTCGGACTAC
GAAGGGTGGT TCTGGCTCGG CTATGCGCTG CACCTGGCCA ATCGCCTGCC CGAGGCGCGA
GATGCGTATT TGCGGTGTGA ACGCATCAAG CCAAGCTATC CACAGTTGAG AAACAACCTT
TCGGCACTTC ACCTGCAGCA GGAAGACTAC AATGCCGCGC AATTCTACGC CAAGGAAGCC
CTGGCGGAAG ATCCGAACAA TGCATCGGCA TGGTCGCTGC TGGGGTCGAG TCATCTGAAG
CGCGCAGAGC TGGATGCGGC CGAGTGTGCG CTCGAGCGCG CGCTGGTCTT GGCCCCTCAC
GATGCCCGTT CGCTGCAAGC GTACTCGTAT ATCTGCAAGG AGCGCCAACG GTGGTCGCAG
GCGATGGAGT TGATTGAGCA GGCCAATCGA CTCAAGCCGC AAGACGGCTC GATTCAGTGG
TCGATCGCGA TGCTGCAATT GCTTCAGGGC CAATACGAAC AAGGGTGGCG TAACCACGAA
GCGCGCTGGC GGGCTGGCGC TGAGCAGGCG GACGAGTATC CGAACCTGCC GATTCCGGCC
TGGCAAAACG AATCGCTGGC GAACAAGACG CTGTTCGTGT GGGGGGAGCA GGGCCACGGC
GACGTCCTGC AATTCGCGCG CTTTATCCCG GAGCTGGCCG GGCGCATTCA CGAGCAAGGC
GGACGGCTGG TCTATTGTGT CTACCCGCCG CTGCTGTCAT TGATCGAACG TAGCGTCGGA
CCCTACGTCG ATGCATTGCT GCCCTCGACT ATGCCCATGC TGCCCGAATG TGATTACCAG
GCACCCCTCG CGAGTTTGCC GTTGGCGTTG AACATCGGTG TGCAGGATTT GCCGGGCGCC
GTGGCCTATC TGAAGGCAGA TCCCCGGAAG GTAGAGCGAT GGCGTCAGCG TATGCCGGCA
AACAATAAAC TGAAAGTCGG ACTCGTTTGG AGCGGTAGCC GCGCGCATCA GCGCAATCGG
TTTCGTAGCG TTTCGCTCGA GATTCTGGAG CGAACCTTGG TCAATGTGAA TCAGGTGGAG
TTCTTCAGTC TGCAGGTCGG CGCCTCGGAG GAGCTCGCAT GGCTGCAGTC GATCGGCATG
CCGATTCACG ACCATACCGA ATCGTTCGAG TCGTTCGACG ATACCGCGGC CTATATCGAG
AACCTGGATC TTGTCGTAAC GGTGTGCACA TCGATCGCCC ACCTGGCCGG TGGCATGGGC
GTGCCGACCT GGATACTGCT CGACGCCAGC CCACACTGGG TCTGGATGAT CGATCGCGAG
GACAGCCCGT GGTATCCGAG TGCTCGGCTT TACCGGCAGC CGACATTTGG ACAATGGGAG
CCGACCTTGC AGCGTGTGGC CCGGGATCTG ACACGCCAGG CGGCGCTCAA GCAGGCACCC
GGGATGAAGG TAAGCAATAT GGACCGAAAT GAATGA
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| Protein sequence | MSRESHPDDI TWLLDRGDVV GANEQLTHRQ AWGSSDPRER VMWARLMLLR GRHDAAANTL
EQARQLDPTC DAVYEVYAQL CLVTGRVQEA MSWFDHAYAH ADPASSWILV WADLLIQQGD
LTRAIAVADR YCCSAPASDY EGWFWLGYAL HLANRLPEAR DAYLRCERIK PSYPQLRNNL
SALHLQQEDY NAAQFYAKEA LAEDPNNASA WSLLGSSHLK RAELDAAECA LERALVLAPH
DARSLQAYSY ICKERQRWSQ AMELIEQANR LKPQDGSIQW SIAMLQLLQG QYEQGWRNHE
ARWRAGAEQA DEYPNLPIPA WQNESLANKT LFVWGEQGHG DVLQFARFIP ELAGRIHEQG
GRLVYCVYPP LLSLIERSVG PYVDALLPST MPMLPECDYQ APLASLPLAL NIGVQDLPGA
VAYLKADPRK VERWRQRMPA NNKLKVGLVW SGSRAHQRNR FRSVSLEILE RTLVNVNQVE
FFSLQVGASE ELAWLQSIGM PIHDHTESFE SFDDTAAYIE NLDLVVTVCT SIAHLAGGMG
VPTWILLDAS PHWVWMIDRE DSPWYPSARL YRQPTFGQWE PTLQRVARDL TRQAALKQAP
GMKVSNMDRN E
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