| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6561 |
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| Symbol | |
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| ID | 6181615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | - |
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| Start bp | 50122 |
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| End bp | 52389 |
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| Gene Length | 2268 bp |
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| Protein Length | 755 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641685330 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001812235 |
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| Protein GI | 172064585 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATGT TCTCGGAAAT CGACTCGCCG GAACCGGCCA AGCGGGGCCT GTTCAGTCGG
CTCAAGGCGT TGAAGCCTAG CTTCGTGGAG AACTCGGCCG CCGCGATGCC GATCGTGGGC
AAGGTCCCCG TGGATGCCGA CGAACCCCCG CGTTCGTTCG AACCGCGGGA ACCCCGCTTC
AAGTCGACCA GCAAGCCAGT CAATCCCCGC CAGGCGGCTG AAGGTCAGCC GATGACGATG
GGCATGCGTC TGAGGATGGC GCAGGCGGAA ATCGAGGATG TCACTGCCGT TGAAGACGCG
CCGATTGCGC CGGTTCGTGA TGACGGGCAG CCGAATTGCG CCCCAGAGGT CACCGGCACC
AATGCTGCTG AAGGCGAGTC ATCGATCAAT GTCAGCCCGC CGGAGTCGCA GCCAGCCGCC
GTCGACTCGA CGGCCGCGTC GCGCCAAGCC GATCGGGTGG ACTCGACCCA CCATATACCC
GAGGTTTCGC CCGACGCTGC TGTTCGCACG GATGAAGGGC GGATGGGACG TCAAACGTCC
GCCGCCGATG AGCTGCCGAC GATTCGTCGC GTCGGCGTCG ATCTGGTCGA CTCCCCCGCG
ATGGAGCATG CGAGCGGCCT GCCGCGGTTG GTTTCCGCCG AGGCACTCAC GTTCAAGCGG
ATTCTCTGCC AGCGCGATCC GAACGCAGCG CTCCGGATCA CCGATGCGGC GCGTCGCGAA
TTCATTGCCG TCGAATTGCA GGCAGGAATC TCGATTGTCG TGACGACGCA GCGTTTTCAT
GAAAGCCAGC TGTATGCGAC TTACCTGAAG GATCTCGCGC GCGCGGATAT CGCCGTCCAC
GAAGAAATGG TCGCGGACGA GGACGTCATC GCGGCCCTCT ACGACAAGGA GCGGCAGCGC
GCGGCCAACG TGGTTCCTGA GTCGTCCCGC GCGATCGGCA CGTTCCGCGA TGTGCTGGAG
GCCGCGCACG CCTATGAGGC GAGCGACGTG CATTGGGAGT ACCGGGACTA CGCCGACGAT
GTGGAGCTGC GCCTGCGCGT CGACGGCGAT CTCTACTCGT ACCGCAAGAT GCCAAAGGCA
CTGGTGCGCC GCGCGCTGTC TGCCGCATAT CAGGACCTGG TCCAGCGCAA TACCAATTCG
GGCGAGACGT TCCAGCCGAC CGCGCCGCAG TCCGCGATGA TTCCGCTCGT GGCACACATG
GATATCGTGA ACATTCGCTG GCAGAGCGCG CCGCTCGTCG GTGGGTTCGA TGTCGCGCTG
CGCCTGCTCG ACGGCAATTT CAAGAACTAT AAGGTTCTGC TCCCGGAGGA CATGGGACTG
GAGCCGAGCC AGCTGGCGAT CATCGAGATG CTCGGCAAGG TCAGCGGTGG AGCGACGTTC
CTGACCGGGG AAACGGGTTC CGGCAAGACG ACGCTGCTGC GTGCGCTGTC GTATCTGTTG
CCCAATCGGG ATCTGAAAAA GCAGTTCGCC GTTAACGAGC CGTCTGAAGT GCCGGCACCG
TGGCTGTCCG ATATCTCGCT CCAGCGGCGT CCGGGCGAGA CGGACGCAGA CGCGAACCGC
AAGATCGTGG AAGTGATTCG CACGCTGATG CGCATGGATC CCGACGATCT GACGATCGGC
GAGGTGCGCG ACGCGGTGCT CGCCGGCCTC GTTGCCGAGC TCGCCCTGAC GGGCCACCCG
GTGCGCGCGA CGCTGCACGG GGACAACATC ATCGGCGCGG TCATGCGGTT GGTGGGCGGG
CGCCTGAACC TGCCGATGGA TGAGGTGGCG TCCGGGAAGT TTCTCAATGC CGTCGGTAAT
CAGAAGCTGA TTCCGAAGTT GTGCCCGCAC TGCAAGCGGC CGGCGCGCGA CGTGCTGTCG
CCACGGCAGC TCGCGACGCT CGAGACAAAG TTCGGGCTCG ACACGTCCAA CATGGCCTGC
CGCGACGAAG AGGGGTGCCA GCATTGCCGC CGACCGGGGT TGCTCACGCG CGCGGGCAAG
GTGGCGGCCG GGATCAAGGG GCAGACGCTT GCGATGGAGT TGTATCAGCC GACGCCCGAG
TTCCTCGATC GCGTGGTCGA TCGGGACTGG CGCGGGGCGG AGCGAGTGTT CCGGACGAGC
CGGAAGACCG AGTTCGGCGA CGCGGACATG ACCGGCAAGA CGGTCTACGA GCATGCGCTG
TACAAGGCCG CGCGCGGCCT CATCGATCCA CGCTTCATCG ACGAATCGAT GTGCGCGTTC
GAGACATACC GCGTGTTCGC GGATGAAGAC GGGGTACTGC CGTCGTGA
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| Protein sequence | MSMFSEIDSP EPAKRGLFSR LKALKPSFVE NSAAAMPIVG KVPVDADEPP RSFEPREPRF
KSTSKPVNPR QAAEGQPMTM GMRLRMAQAE IEDVTAVEDA PIAPVRDDGQ PNCAPEVTGT
NAAEGESSIN VSPPESQPAA VDSTAASRQA DRVDSTHHIP EVSPDAAVRT DEGRMGRQTS
AADELPTIRR VGVDLVDSPA MEHASGLPRL VSAEALTFKR ILCQRDPNAA LRITDAARRE
FIAVELQAGI SIVVTTQRFH ESQLYATYLK DLARADIAVH EEMVADEDVI AALYDKERQR
AANVVPESSR AIGTFRDVLE AAHAYEASDV HWEYRDYADD VELRLRVDGD LYSYRKMPKA
LVRRALSAAY QDLVQRNTNS GETFQPTAPQ SAMIPLVAHM DIVNIRWQSA PLVGGFDVAL
RLLDGNFKNY KVLLPEDMGL EPSQLAIIEM LGKVSGGATF LTGETGSGKT TLLRALSYLL
PNRDLKKQFA VNEPSEVPAP WLSDISLQRR PGETDADANR KIVEVIRTLM RMDPDDLTIG
EVRDAVLAGL VAELALTGHP VRATLHGDNI IGAVMRLVGG RLNLPMDEVA SGKFLNAVGN
QKLIPKLCPH CKRPARDVLS PRQLATLETK FGLDTSNMAC RDEEGCQHCR RPGLLTRAGK
VAAGIKGQTL AMELYQPTPE FLDRVVDRDW RGAERVFRTS RKTEFGDADM TGKTVYEHAL
YKAARGLIDP RFIDESMCAF ETYRVFADED GVLPS
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