| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6502 |
|---|
| Symbol | |
|---|
| ID | 6181836 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010553 |
|---|
| Strand | - |
|---|
| Start bp | 4 |
|---|
| End bp | 1872 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641685271 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001812176 |
|---|
| Protein GI | 172064526 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.571397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.732963 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGCT ACATCAATCA TTTTCGGCCG ATCTACGAGC TCAGGGCCGC GCTCGTATGG
CTGCTCGCGA TTGTCATGTT GCCGCTGTCC GGGATGCCGC ATGCGTGGGC ATTCGCGCTG
ATCGCCCTGG TGGCGTTTGC GATTCGATCT GGGCAGGTCT GGCGCGCGCT GAAATTCCGC
ATGGCCATCT CGACGAAATG GCTGACGACG CTCGCGGTGC CCAAGCTGCT CGCGATCCAG
TTACGCATGA AAGCGGAAGC GAATGCGATG TTTCTCGGCA CCGGCTTTGA GTGGACCCAG
AAGCACTGCC AGATCGCGCA TGACATTCTT CGCATGCCGT CGACGGATAT CCCGGGCCTT
CCGAAGTGGC TGCCGAAGAC TAAAACCGGA CGTCAGTTCG AGGAGATGAT CGAGCGGCTC
TTTGCCCCGA AGGACAGTAT CAGAGACCGC ATGCCGCAAG GTGTCTCGTG GATCCACGGA
CTGGAACCGG CGAAGGGCTA CGTGCCATTC CACTACAAGG CGATGGGCGG CCACACCGCG
GTGGGCGGCA CGACCGGTGC GGGGAAGACG CGTACCTACG AGTGCATTTC CACCCAGGTG
ATCCATCTCG GCGATGTGTT GCTCGACTTC GATCCGAAAA ACGACAAGGA ATGGAAGCTC
CGGGTGGAGC GGGAGTGCAA GCGGGCCGGC CGGAAGTTCC TGTACTTCAA TCAGGCTAAG
CCGTCGGAAT CGATTCGCCT GGAGCCGCTC GATAGTTGGT CGCAACCTTC GGAGATCCCG
AGCCGGATCG CGCAGCTGAT GGAAGAGGGG CCGTTCCGCG ACTTTGCGTA CCTGTTCATC
AGCCGCTCGG TAAACGGCGA GCTGTACATC GGCGACAAGC CGAACCTGCG GTCGATTCTC
AAGTATGCCC AGTCGGGCAT CGCGACGCTG CTGGAGAAGG CGCTGAAGCG CTTCTTCCTC
GAACAGGGCC TGACGGATTG GGAAACGCAG GTCGCAGCCG ACACGGTGAA GATGGCCAAC
AAGCCCGGCG TCTCCAAAGT GGATGGCATG GTCGCGCTGT ACCAGGCACG GTTCGCGGCA
CTCGACCGCG GCCACGAGGC GATCGACGGC CTGATCTCGA CGCACACGCA CGACCGCGAA
CACTACATGC GGATCATAGC GTCGGCGCTC CCGCTGCTGC AAATGCTCGC AACCGGCGAA
ACCGGCCTGA TGCTGGCGCC GAAGGTCGAC GACTTCGAGG ACGAGCGCGA GATCTGGACC
ATCGAGAAGA TCATCCGCCA GAAGGCGGTG CTCCACGTGG GGGCGGACTC GCTATCGAAC
AGCATCGTGG CGAAGGCGAT CATGTCGATG CTGCTCGCCG ACGTGTCAGC GGTCTGCGGC
TCGATCTACA ACTTCTACGA GACACCGCCG GAGGTCGTGC TGATCATCGA CGAGGTCGCG
GAGGCGATCA ACGAACAGGT GATTCAGATC TTGAACAAGG GGCGTGGCGC AGGCTTCAAG
GCGTTCGTCG CATTCCAGAC GCGCTCGGAC ATCGAGGCGA AGCTCGGAAA TGCCGCAAAA
ATGCTGCAGG TTTTGGGCAA TTTGAACAAC CAGATCATCT TACGCTTAGA GGACACCGAC
ACGGCGGACT GGTTCTCCGA CAAGGTCGGG GAGACGGCGA TCCGCAACCT GGTGATGTCG
AGTTCGACCA GCACGGGTAG CGAGTCGCAC GTCGGTGAAT TTACGGGATC GGTGTCTCGC
TCGCTCCAAC TTGAGAAAGT ACCGCTGATT CCATCCCGCC TGATACAGAG CCTTCCGAAC
CTGCAGTACT TCATGCGGAT TTCGGGCGGT GCGGTGTATC AGGGCCGCAT TCCAATCCTA
AATGGCTGA
|
|---|
| Protein sequence | MNGYINHFRP IYELRAALVW LLAIVMLPLS GMPHAWAFAL IALVAFAIRS GQVWRALKFR
MAISTKWLTT LAVPKLLAIQ LRMKAEANAM FLGTGFEWTQ KHCQIAHDIL RMPSTDIPGL
PKWLPKTKTG RQFEEMIERL FAPKDSIRDR MPQGVSWIHG LEPAKGYVPF HYKAMGGHTA
VGGTTGAGKT RTYECISTQV IHLGDVLLDF DPKNDKEWKL RVERECKRAG RKFLYFNQAK
PSESIRLEPL DSWSQPSEIP SRIAQLMEEG PFRDFAYLFI SRSVNGELYI GDKPNLRSIL
KYAQSGIATL LEKALKRFFL EQGLTDWETQ VAADTVKMAN KPGVSKVDGM VALYQARFAA
LDRGHEAIDG LISTHTHDRE HYMRIIASAL PLLQMLATGE TGLMLAPKVD DFEDEREIWT
IEKIIRQKAV LHVGADSLSN SIVAKAIMSM LLADVSAVCG SIYNFYETPP EVVLIIDEVA
EAINEQVIQI LNKGRGAGFK AFVAFQTRSD IEAKLGNAAK MLQVLGNLNN QIILRLEDTD
TADWFSDKVG ETAIRNLVMS SSTSTGSESH VGEFTGSVSR SLQLEKVPLI PSRLIQSLPN
LQYFMRISGG AVYQGRIPIL NG
|
|---|
| |