| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5501 |
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| Symbol | |
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| ID | 6179457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 2752441 |
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| End bp | 2755074 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641685256 |
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| Product | hopanoid biosynthesis associated RND transporter like protein HpnN |
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| Protein accession | YP_001812161 |
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| Protein GI | 172064510 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1033] Predicted exporters of the RND superfamily |
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| TIGRFAM ID | [TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.921684 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0209878 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGACAT CTCTCATCGT CCGACTCGTC GCATTGTCGG TACGCCGCCC CGTCTGGGTC
GTCGTGCTGT CGCTCGTCAT TGCCGTCTTT AGCGGCGTCT ATGTCGCGCA GCACTTCAAG
ATCAACACGG ACATCAGCAA ACTGGTCGAC GCGGAACCGC AGTGGGCCGC CCTCAGCAAG
GCCGTCGACA AAGCCTTCCC GCAACGCAAC GGCACGATCC TCGCGGTGGT CGAGGCGCCG
GCGCCCGAAT TCGCGACGGC CGCCGCGCAC GCGCTCACCG AAGCGCTGCA GAAGCAGGCC
GACGCCGGCC GGATCGGCCA GGTCGCCGAA CCCGGCGGCG GCCCGTTCTT CGAGCACAAC
GGGCTGCTGT TCCTGTCGTC GCAGGAAGTG TCGGACACCA CGTCGCAGCT CGCGAGCGCG
CGTCCGCTCG TCAACGAACT CGCGAAGAAC CCGAGCCTGA CCGGCCTCGC GACCACGCTG
TCCACCACGC TCGGCCAGCC GCTCCTCACC GGCCAGGTAA AGCTGCCCGC GATGGCGAAG
CTGCTCGCGC GCAGCGCCGC GACGGTCGAC GACGTGCTGG CCGGCAAGCC GGCCGCGTTC
TCGTGGCGCG GGCTGGTCGA CAGCGATGCC GCGCGCCAGC CCGCCCGCGC GTTCGTCACC
GTGCAGCCGG TCGTGAACTA CGGCGCGCTG AAGGCCGGTG CGGAAACGAC GCAGGTGATC
CGCGACACCG CGCAAGCGCT CGGCCTCGAG CAACGCTACG GCGCGGCCGT GCGCCTGACC
GGCGAACAGC CGCTCGCCGA CGACGAATTC GCGTCGGTGG AAGACGGCGC CGCGCTCAAC
GGCGCACTCA CGCTGCTCGC CGTGCTCGTG ATCCTGTGGC TCGCGCTGCG CTCGAAGCGG
ATGATCGGCT CGGTGCTCGT CACGCTGTTC GTCGGCCTCG TCGTGACGGC CGCGCTCGGC
CTCGCGATGG TCGGTTCGCT GAACATGATC TCGGTCGCGT TCATGGTGCT GTTCGTCGGC
CTCGGCGTCG ACTTCTCGAT CCAATACGGC GTGAAGTACC GCGAGGAACG CTTCCGCGAT
CAACGCATCG ATCACGCGCT GATCGGCGCC GCGCACTCGA TGGGCATGCC GCTCGCGCTC
GCCACCACGG CGGTCGCCGC GAGCTTCTTC TCGTTCATCC CCACCGCCTA TCGCGGCGTG
TCCGAGCTCG GCCTGATCGC GGGCGTCGGG ATGTTCGTCG CGCTGCTGAC CACGCTCACG
CTGCTGCCCG CGCTGCTGCG CCTGTTCGCG CCGCCGGGCG AATCGAAGAC GCCGGGCTTT
CCGTGGCTCG CACCGGTCGA CGATTTCCTC GATCGCCATC GCAAGCCGAT CCTGATCGGC
ACGCTCGCGG TCGTGATCGG CGCGCTGCCG CTGCTCGCGT TCCTGCACTT CGACTTCAAC
CCGCTGCACC TGAAGGATCC GCACAGCGAA TCGATGGCGA CGCTGCTCGC GCTGAAGGAT
TCGCCCGAAG CGGCCGTCAA CGACGTCACG CTGCTCGCGC CGTCGCTCGC CGAGGCCGAC
GCGGCCGCGA AGCGCCTCGA CGCGCTGCCG GAAGTCGGCC GCACGACGAC GCTCACGACC
TTCGTCCCGG CCGACCAGCC GGCCAAGCGC GCGGCGATCG CCGCGGCCGC GAGCGAACTG
CTGCCTGCGC TCACGCAGCC GGCCGCGCCG AAAGCGACCG ACGCGCAGCG CGTCGCCGCG
CTCAAGCGGG TGTCCGACCT GCTGGGCTAC GCGGCGGAAG ATCACCCGGG CCCGGGCGCG
GCCGCCGCCC AGCATCTGTC GGCATCGCTC GCGAAGCTCG CCGCCGCCGA CAGCGCGACG
CGCGACCGCG CCGAACGCGC ATTCTCCGAC ACGCTGCGCA TCGCGCTGAA CCAGCTCGCG
ACGCTGCTGC AGCCGCAGGA CGTCACGCGC GAATCGCTGC CGCCGCCGAT CGTGCGCGAC
TGGGTCGCGC CGGACGGCCA TGCGCTCGTG CAGATCTCGC CGAAGGTGCC GAAGGGCGTC
GACCCGAACG ACGACACGAT GCTGCGCCGC TTCGCGAAGG CGGTGAAGGC CGCGGAGCCG
GGCGCGACCG GCGGTCCGAT CTCGATCCTG CATTCGGCCG ACACGATCAT CAATGCGTTC
CTGCACGCGG CGCTGTGGTC GATCATCTCG ATCACCATCC TGCTGTGGAT CACGCTGCGC
CGCTTCGGCG ACGTGCTGCG CACGCTGGTG CCGCTGCTCG TGTCGGGCCT CGTGACGCTC
GAGATGTGCG TGCTGCTCGG CATGTCGCTG AACTTCGCGA ATATCATCGC GCTGCCGCTG
ATGCTCGGCG TCGGCGTCGC GTTCAAGGTG TACTTCGTGA TGGCGTGGCG CGCGGGGCAG
ACGGGCCTGT TGCACTCGAG CCTCACGCAC GCGGTGCTGT TCAGCGCCGC GACGACGGCA
ACCGCCTTCG GCAGCCTGTG GCTGTCGCAT CATCCGGGCA CGTCGAGCAT GGGCAAGCTG
CTCGCGCTGG CGTTGACCTG CACCCTGATC GGCGCCGTGG TGTTTCAGCC CGTCCTGATG
GGCAAACCGC GCGTCAAACG CGCCCAGAAC CAATCGCAAG GAAACAATGA ATAA
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| Protein sequence | MVTSLIVRLV ALSVRRPVWV VVLSLVIAVF SGVYVAQHFK INTDISKLVD AEPQWAALSK
AVDKAFPQRN GTILAVVEAP APEFATAAAH ALTEALQKQA DAGRIGQVAE PGGGPFFEHN
GLLFLSSQEV SDTTSQLASA RPLVNELAKN PSLTGLATTL STTLGQPLLT GQVKLPAMAK
LLARSAATVD DVLAGKPAAF SWRGLVDSDA ARQPARAFVT VQPVVNYGAL KAGAETTQVI
RDTAQALGLE QRYGAAVRLT GEQPLADDEF ASVEDGAALN GALTLLAVLV ILWLALRSKR
MIGSVLVTLF VGLVVTAALG LAMVGSLNMI SVAFMVLFVG LGVDFSIQYG VKYREERFRD
QRIDHALIGA AHSMGMPLAL ATTAVAASFF SFIPTAYRGV SELGLIAGVG MFVALLTTLT
LLPALLRLFA PPGESKTPGF PWLAPVDDFL DRHRKPILIG TLAVVIGALP LLAFLHFDFN
PLHLKDPHSE SMATLLALKD SPEAAVNDVT LLAPSLAEAD AAAKRLDALP EVGRTTTLTT
FVPADQPAKR AAIAAAASEL LPALTQPAAP KATDAQRVAA LKRVSDLLGY AAEDHPGPGA
AAAQHLSASL AKLAAADSAT RDRAERAFSD TLRIALNQLA TLLQPQDVTR ESLPPPIVRD
WVAPDGHALV QISPKVPKGV DPNDDTMLRR FAKAVKAAEP GATGGPISIL HSADTIINAF
LHAALWSIIS ITILLWITLR RFGDVLRTLV PLLVSGLVTL EMCVLLGMSL NFANIIALPL
MLGVGVAFKV YFVMAWRAGQ TGLLHSSLTH AVLFSAATTA TAFGSLWLSH HPGTSSMGKL
LALALTCTLI GAVVFQPVLM GKPRVKRAQN QSQGNNE
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